Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRF1Q92994 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRF1Q92994 AC009090.5-201ENST00000624886 2285 ntBASIC18.76■□□□□ 0.59
BRF1Q92994 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BRF1Q92994 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRF1Q92994 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.76■□□□□ 0.59
BRF1Q92994 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
BRF1Q92994 AC020658.6-201ENST00000623564 1870 ntBASIC18.75■□□□□ 0.59
BRF1Q92994 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.75■□□□□ 0.59
BRF1Q92994 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.75■□□□□ 0.59
BRF1Q92994 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.75■□□□□ 0.59
BRF1Q92994 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 PHKG1P2-201ENST00000457537 863 ntBASIC18.75■□□□□ 0.59
BRF1Q92994 HLA-J-203ENST00000494367 1087 ntBASIC18.75■□□□□ 0.59
BRF1Q92994 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.75■□□□□ 0.59
BRF1Q92994 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.75■□□□□ 0.59
BRF1Q92994 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
BRF1Q92994 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.75■□□□□ 0.59
BRF1Q92994 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.75■□□□□ 0.59
BRF1Q92994 SSR4P1-203ENST00000599569 2260 ntBASIC18.75■□□□□ 0.59
BRF1Q92994 PPT1-215ENST00000641471 2368 ntBASIC18.75■□□□□ 0.59
BRF1Q92994 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRF1Q92994 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.75■□□□□ 0.59
BRF1Q92994 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.74■□□□□ 0.59
BRF1Q92994 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 DBET-201ENST00000630918 3363 ntBASIC18.74■□□□□ 0.59
BRF1Q92994 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
BRF1Q92994 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.74■□□□□ 0.59
BRF1Q92994 SPDYE7P-202ENST00000420373 878 ntBASIC18.74■□□□□ 0.59
BRF1Q92994 TSEN15P1-201ENST00000423257 515 ntBASIC18.74■□□□□ 0.59
BRF1Q92994 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.74■□□□□ 0.59
BRF1Q92994 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.74■□□□□ 0.59
BRF1Q92994 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
BRF1Q92994 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.74■□□□□ 0.59
BRF1Q92994 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRF1Q92994 AC105250.1-201ENST00000509378 2057 ntBASIC18.73■□□□□ 0.59
BRF1Q92994 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRF1Q92994 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.73■□□□□ 0.59
BRF1Q92994 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.73■□□□□ 0.59
BRF1Q92994 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.73■□□□□ 0.59
BRF1Q92994 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRF1Q92994 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRF1Q92994 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.73■□□□□ 0.59
BRF1Q92994 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
BRF1Q92994 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRF1Q92994 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRF1Q92994 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRF1Q92994 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms