Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 CYP4F24P-201ENST00000586049 1580 ntBASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 FO538757.1-201ENST00000623083 1397 ntBASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 TREML5P-201ENST00000421694 576 ntBASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 AC112504.1-201ENST00000623415 1841 ntBASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 AL136982.4-201ENST00000437689 1740 ntBASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NUP54Q7Z3B4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 KRT8P12-202ENST00000472924 1397 ntBASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NUP54Q7Z3B4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
NUP54Q7Z3B4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms