Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 AC007274.1-201ENST00000439805 662 ntBASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 GNAQP1-201ENST00000444815 1067 ntBASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 CROCCP1-201ENST00000426910 5675 ntBASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 AC140912.1-201ENST00000577171 1054 ntBASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 AP005117.1-202ENST00000581724 1908 ntBASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC144BQ3MJ40 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms