Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH12P55289 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH12P55289 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CDH12P55289 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH12P55289 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH12P55289 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH12P55289 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH12P55289 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH12P55289 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.92□□□□□ -0.02
CDH12P55289 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CDH12P55289 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 AC011477.6-201ENST00000604980 1927 ntBASIC14.92□□□□□ -0.02
CDH12P55289 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CDH12P55289 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
CDH12P55289 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 KRT18P2-201ENST00000447938 1258 ntBASIC14.92□□□□□ -0.02
CDH12P55289 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.92□□□□□ -0.02
CDH12P55289 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.92□□□□□ -0.02
CDH12P55289 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.92□□□□□ -0.02
CDH12P55289 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.92□□□□□ -0.02
CDH12P55289 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.92□□□□□ -0.02
CDH12P55289 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 AL078644.1-201ENST00000609881 752 ntBASIC14.92□□□□□ -0.02
CDH12P55289 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.92□□□□□ -0.02
CDH12P55289 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CDH12P55289 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CDH12P55289 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDH12P55289 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.92□□□□□ -0.02
CDH12P55289 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.92□□□□□ -0.02
CDH12P55289 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.91□□□□□ -0.02
CDH12P55289 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CDH12P55289 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH12P55289 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CDH12P55289 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.91□□□□□ -0.02
CDH12P55289 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CDH12P55289 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH12P55289 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.91□□□□□ -0.02
CDH12P55289 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH12P55289 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 AC007967.2-201ENST00000432613 625 ntBASIC14.91□□□□□ -0.02
CDH12P55289 RPL13AP23-201ENST00000480739 586 ntBASIC14.91□□□□□ -0.02
CDH12P55289 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH12P55289 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH12P55289 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH12P55289 KRT19P2-202ENST00000557173 1012 ntBASIC14.91□□□□□ -0.02
CDH12P55289 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.91□□□□□ -0.02
CDH12P55289 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH12P55289 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms