Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AL512343.1-201ENST00000605837 169 ntBASIC17.1■□□□□ 0.33
VCPP55072 AC020765.3-201ENST00000613051 740 ntBASIC17.1■□□□□ 0.33
VCPP55072 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VCPP55072 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.1■□□□□ 0.33
VCPP55072 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.1■□□□□ 0.33
VCPP55072 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.1■□□□□ 0.33
VCPP55072 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VCPP55072 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCPP55072 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VCPP55072 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.09■□□□□ 0.33
VCPP55072 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 RARRES2P9-201ENST00000565168 469 ntBASIC17.09■□□□□ 0.33
VCPP55072 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.09■□□□□ 0.33
VCPP55072 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.09■□□□□ 0.33
VCPP55072 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.09■□□□□ 0.33
VCPP55072 AL844908.2-201ENST00000609461 460 ntBASIC17.09■□□□□ 0.33
VCPP55072 AC007967.4-201ENST00000614700 386 ntBASIC17.09■□□□□ 0.33
VCPP55072 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.09■□□□□ 0.33
VCPP55072 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.09■□□□□ 0.33
VCPP55072 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.09■□□□□ 0.33
VCPP55072 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.09■□□□□ 0.33
VCPP55072 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCPP55072 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.08■□□□□ 0.33
VCPP55072 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCPP55072 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCPP55072 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.08■□□□□ 0.33
VCPP55072 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCPP55072 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VCPP55072 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
VCPP55072 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.08■□□□□ 0.33
VCPP55072 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCPP55072 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.08■□□□□ 0.33
VCPP55072 MST1L-201ENST00000442552 2185 ntBASIC17.08■□□□□ 0.33
VCPP55072 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VCPP55072 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
VCPP55072 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.08■□□□□ 0.32
VCPP55072 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.08■□□□□ 0.32
VCPP55072 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.08■□□□□ 0.32
VCPP55072 DFFBP1-201ENST00000433250 979 ntBASIC17.08■□□□□ 0.32
VCPP55072 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.08■□□□□ 0.32
VCPP55072 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.08■□□□□ 0.32
VCPP55072 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.08■□□□□ 0.32
VCPP55072 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.08■□□□□ 0.32
VCPP55072 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 CHCHD2P3-201ENST00000603038 451 ntBASIC17.08■□□□□ 0.32
VCPP55072 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 AC010491.1-201ENST00000563101 2797 ntBASIC17.08■□□□□ 0.32
VCPP55072 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms