Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.51■□□□□ 0.87
COL18A1P39060 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL18A1P39060 HNRNPA1P63-201ENST00000427917 963 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 CHMP1AP1-201ENST00000445563 662 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 FTLP10-202ENST00000505798 471 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL18A1P39060 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC20.51■□□□□ 0.87
COL18A1P39060 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC20.51■□□□□ 0.87
COL18A1P39060 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.51■□□□□ 0.87
COL18A1P39060 AC007787.1-201ENST00000588095 1583 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 AC007663.3-201ENST00000609632 465 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL18A1P39060 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL18A1P39060 AL645937.2-201ENST00000396808 931 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 ACTG1P2-201ENST00000415776 1125 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 ACTG1P11-201ENST00000425411 1125 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC20.51■□□□□ 0.87
COL18A1P39060 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC20.51■□□□□ 0.87
COL18A1P39060 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
COL18A1P39060 FGFR3P5-201ENST00000564496 886 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL18A1P39060 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
COL18A1P39060 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
COL18A1P39060 AC018635.2-201ENST00000608625 364 ntBASIC20.51■□□□□ 0.87
COL18A1P39060 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC20.51■□□□□ 0.87
COL18A1P39060 SNX1-214ENST00000625244 324 ntTSL 5 BASIC20.51■□□□□ 0.87
COL18A1P39060 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL18A1P39060 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
COL18A1P39060 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.5■□□□□ 0.87
COL18A1P39060 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
COL18A1P39060 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 AC007274.2-201ENST00000421675 662 ntBASIC20.5■□□□□ 0.87
COL18A1P39060 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
COL18A1P39060 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC20.5■□□□□ 0.87
COL18A1P39060 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC20.5■□□□□ 0.87
COL18A1P39060 AC004466.1-201ENST00000599515 1080 ntBASIC20.5■□□□□ 0.87
COL18A1P39060 OR10B1P-201ENST00000601666 907 ntBASIC20.5■□□□□ 0.87
COL18A1P39060 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
COL18A1P39060 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
COL18A1P39060 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.5■□□□□ 0.87
COL18A1P39060 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
COL18A1P39060 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL18A1P39060 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.49■□□□□ 0.87
COL18A1P39060 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.49■□□□□ 0.87
COL18A1P39060 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 NDUFAB1P1-201ENST00000404262 460 ntBASIC20.49■□□□□ 0.87
COL18A1P39060 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 AC245884.6-201ENST00000515672 1067 ntBASIC20.49■□□□□ 0.87
COL18A1P39060 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC20.49■□□□□ 0.87
COL18A1P39060 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC20.49■□□□□ 0.87
COL18A1P39060 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
COL18A1P39060 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 TUBBP5-203ENST00000508529 1334 ntBASIC20.49■□□□□ 0.87
COL18A1P39060 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 TPM3P8-201ENST00000330554 643 ntBASIC20.49■□□□□ 0.87
COL18A1P39060 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
COL18A1P39060 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 HLA-DQB2-229ENST00000411527 1059 ntBASIC20.49■□□□□ 0.87
COL18A1P39060 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC20.49■□□□□ 0.87
COL18A1P39060 GHSR-202ENST00000427970 912 ntBASIC20.49■□□□□ 0.87
COL18A1P39060 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC20.49■□□□□ 0.87
COL18A1P39060 AC004066.1-201ENST00000502488 802 ntBASIC20.49■□□□□ 0.87
COL18A1P39060 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC20.49■□□□□ 0.87
COL18A1P39060 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC20.49■□□□□ 0.87
COL18A1P39060 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL18A1P39060 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.49■□□□□ 0.87
COL18A1P39060 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms