Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.87■□□□□ 0.61
BRCA1P38398 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.87■□□□□ 0.61
BRCA1P38398 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.87■□□□□ 0.61
BRCA1P38398 AC097065.1-201ENST00000425737 517 ntBASIC18.87■□□□□ 0.61
BRCA1P38398 HLA-J-204ENST00000495278 958 ntBASIC18.87■□□□□ 0.61
BRCA1P38398 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
BRCA1P38398 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
BRCA1P38398 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.87■□□□□ 0.61
BRCA1P38398 AC141586.1-203ENST00000567242 366 ntBASIC18.87■□□□□ 0.61
BRCA1P38398 AL358472.3-201ENST00000608147 415 ntBASIC18.87■□□□□ 0.61
BRCA1P38398 AL645728.2-202ENST00000641679 227 ntBASIC18.87■□□□□ 0.61
BRCA1P38398 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.87■□□□□ 0.61
BRCA1P38398 AC025271.4-201ENST00000621477 1726 ntBASIC18.87■□□□□ 0.61
BRCA1P38398 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.87■□□□□ 0.61
BRCA1P38398 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.87■□□□□ 0.61
BRCA1P38398 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
BRCA1P38398 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.86■□□□□ 0.61
BRCA1P38398 RCC2P8-201ENST00000502779 1035 ntBASIC18.86■□□□□ 0.61
BRCA1P38398 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
BRCA1P38398 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 AC087045.2-201ENST00000606279 1003 ntBASIC18.86■□□□□ 0.61
BRCA1P38398 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
BRCA1P38398 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 AL157791.1-201ENST00000553667 1699 ntBASIC18.86■□□□□ 0.61
BRCA1P38398 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
BRCA1P38398 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.86■□□□□ 0.61
BRCA1P38398 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 RN7SKP214-201ENST00000364208 315 ntBASIC18.86■□□□□ 0.61
BRCA1P38398 AL645937.2-201ENST00000396808 931 ntBASIC18.86■□□□□ 0.61
BRCA1P38398 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.86■□□□□ 0.61
BRCA1P38398 RPL18P13-201ENST00000478088 569 ntBASIC18.86■□□□□ 0.61
BRCA1P38398 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.86■□□□□ 0.61
BRCA1P38398 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.86■□□□□ 0.61
BRCA1P38398 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.86■□□□□ 0.61
BRCA1P38398 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC18.86■□□□□ 0.61
BRCA1P38398 RBM8B-201ENST00000555532 525 ntBASIC18.86■□□□□ 0.61
BRCA1P38398 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.86■□□□□ 0.61
BRCA1P38398 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC18.86■□□□□ 0.61
BRCA1P38398 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
BRCA1P38398 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
BRCA1P38398 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.85■□□□□ 0.61
BRCA1P38398 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.85■□□□□ 0.61
BRCA1P38398 AC068880.1-201ENST00000507289 2297 ntBASIC18.85■□□□□ 0.61
BRCA1P38398 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 AL139008.1-201ENST00000437894 228 ntBASIC18.85■□□□□ 0.61
BRCA1P38398 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.85■□□□□ 0.61
BRCA1P38398 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.85■□□□□ 0.61
BRCA1P38398 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
BRCA1P38398 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.85■□□□□ 0.61
BRCA1P38398 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.85■□□□□ 0.61
BRCA1P38398 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.85■□□□□ 0.61
BRCA1P38398 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.85■□□□□ 0.61
BRCA1P38398 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
BRCA1P38398 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.85■□□□□ 0.61
BRCA1P38398 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
BRCA1P38398 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
BRCA1P38398 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.84■□□□□ 0.61
BRCA1P38398 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
BRCA1P38398 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
BRCA1P38398 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC18.84■□□□□ 0.61
BRCA1P38398 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
BRCA1P38398 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms