Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC9P31274 FAM197Y7-201ENST00000432892 766 ntBASIC20.85■□□□□ 0.93
HOXC9P31274 AGER-214ENST00000538695 487 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC9P31274 RIT1-205ENST00000539040 919 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC9P31274 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC20.85■□□□□ 0.93
HOXC9P31274 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.85■□□□□ 0.93
HOXC9P31274 AC244093.1-201ENST00000610837 814 ntBASIC20.85■□□□□ 0.93
HOXC9P31274 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
HOXC9P31274 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.85■□□□□ 0.93
HOXC9P31274 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
HOXC9P31274 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 AC124067.4-201ENST00000519691 2379 ntBASIC20.85■□□□□ 0.93
HOXC9P31274 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 MTHFR-217ENST00000641820 1569 ntBASIC20.85■□□□□ 0.93
HOXC9P31274 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 AC069224.1-201ENST00000566372 1715 ntBASIC20.84■□□□□ 0.93
HOXC9P31274 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC9P31274 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HOXC9P31274 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 AC006001.1-201ENST00000325130 474 ntBASIC20.84■□□□□ 0.93
HOXC9P31274 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 AC099548.2-209ENST00000480264 625 ntBASIC20.84■□□□□ 0.93
HOXC9P31274 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC20.84■□□□□ 0.93
HOXC9P31274 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC20.84■□□□□ 0.93
HOXC9P31274 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC9P31274 AC078819.1-201ENST00000547454 765 ntBASIC20.84■□□□□ 0.93
HOXC9P31274 AC012085.1-201ENST00000548270 765 ntBASIC20.84■□□□□ 0.93
HOXC9P31274 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC20.84■□□□□ 0.93
HOXC9P31274 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.84■□□□□ 0.93
HOXC9P31274 RN7SL560P-201ENST00000577943 264 ntBASIC20.84■□□□□ 0.93
HOXC9P31274 AC145423.3-201ENST00000615987 467 ntBASIC20.84■□□□□ 0.93
HOXC9P31274 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC9P31274 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC9P31274 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXC9P31274 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXC9P31274 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXC9P31274 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC9P31274 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC9P31274 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC9P31274 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC9P31274 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC20.83■□□□□ 0.93
HOXC9P31274 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC9P31274 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC9P31274 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
HOXC9P31274 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC9P31274 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
HOXC9P31274 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.83■□□□□ 0.92
HOXC9P31274 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC20.83■□□□□ 0.92
HOXC9P31274 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.83■□□□□ 0.92
HOXC9P31274 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC9P31274 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
HOXC9P31274 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HOXC9P31274 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HOXC9P31274 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.82■□□□□ 0.92
HOXC9P31274 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.82■□□□□ 0.92
HOXC9P31274 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXC9P31274 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC20.82■□□□□ 0.92
HOXC9P31274 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXC9P31274 FAM86HP-204ENST00000513466 959 ntBASIC20.82■□□□□ 0.92
HOXC9P31274 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms