Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.77■□□□□ 0.28
BDNFP23560 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.77■□□□□ 0.28
BDNFP23560 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.77■□□□□ 0.28
BDNFP23560 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.77■□□□□ 0.28
BDNFP23560 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.77■□□□□ 0.28
BDNFP23560 RPL13P2-201ENST00000440687 659 ntBASIC16.77■□□□□ 0.28
BDNFP23560 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 MEIS3P1-201ENST00000495167 958 ntBASIC16.77■□□□□ 0.28
BDNFP23560 LINC02447-202ENST00000501888 2146 ntBASIC16.77■□□□□ 0.28
BDNFP23560 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.77■□□□□ 0.28
BDNFP23560 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.77■□□□□ 0.28
BDNFP23560 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.77■□□□□ 0.28
BDNFP23560 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.77■□□□□ 0.28
BDNFP23560 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.77■□□□□ 0.28
BDNFP23560 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
BDNFP23560 TP53TG3HP-202ENST00000569755 579 ntBASIC16.77■□□□□ 0.28
BDNFP23560 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.77■□□□□ 0.27
BDNFP23560 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.77■□□□□ 0.27
BDNFP23560 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
BDNFP23560 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BDNFP23560 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BDNFP23560 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.77■□□□□ 0.27
BDNFP23560 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.77■□□□□ 0.27
BDNFP23560 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.77■□□□□ 0.27
BDNFP23560 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
BDNFP23560 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.77■□□□□ 0.27
BDNFP23560 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BDNFP23560 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BDNFP23560 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BDNFP23560 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
BDNFP23560 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.76■□□□□ 0.27
BDNFP23560 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.76■□□□□ 0.27
BDNFP23560 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 AC087499.6-201ENST00000411576 835 ntBASIC16.76■□□□□ 0.27
BDNFP23560 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 AC055876.2-201ENST00000531834 546 ntBASIC16.76■□□□□ 0.27
BDNFP23560 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
BDNFP23560 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.76■□□□□ 0.27
BDNFP23560 AC140912.1-201ENST00000577171 1054 ntBASIC16.76■□□□□ 0.27
BDNFP23560 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.76■□□□□ 0.27
BDNFP23560 AC097359.3-201ENST00000603982 1210 ntBASIC16.76■□□□□ 0.27
BDNFP23560 C8orf49-201ENST00000525043 1968 ntBASIC16.76■□□□□ 0.27
BDNFP23560 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 AL607033.1-201ENST00000623900 1599 ntBASIC16.76■□□□□ 0.27
BDNFP23560 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.76■□□□□ 0.27
BDNFP23560 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 AL391825.1-201ENST00000457671 1364 ntBASIC16.76■□□□□ 0.27
BDNFP23560 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.76■□□□□ 0.27
BDNFP23560 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
BDNFP23560 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 AC024909.3-201ENST00000611513 2257 ntBASIC16.75■□□□□ 0.27
BDNFP23560 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 AC136604.1-201ENST00000418535 575 ntBASIC16.75■□□□□ 0.27
BDNFP23560 KRT18P64-201ENST00000434946 1219 ntBASIC16.75■□□□□ 0.27
BDNFP23560 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.75■□□□□ 0.27
BDNFP23560 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.75■□□□□ 0.27
BDNFP23560 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms