Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.01□□□□□ -0.01
COL5A1P20908 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.01□□□□□ -0.01
COL5A1P20908 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 AKR7A2P1-201ENST00000460134 915 ntBASIC15.01□□□□□ -0.01
COL5A1P20908 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 MIR4741-201ENST00000579822 90 ntBASIC15.01□□□□□ -0.01
COL5A1P20908 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.01□□□□□ -0.01
COL5A1P20908 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.01□□□□□ -0.01
COL5A1P20908 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.01□□□□□ -0.01
COL5A1P20908 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.01□□□□□ -0.01
COL5A1P20908 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.01□□□□□ -0.01
COL5A1P20908 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 AC020914.3-201ENST00000594712 304 ntBASIC15.01□□□□□ -0.01
COL5A1P20908 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
COL5A1P20908 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL5A1P20908 AL354989.2-201ENST00000435838 1540 ntBASIC15.01□□□□□ -0.01
COL5A1P20908 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL5A1P20908 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 FZD10-202ENST00000539839 3282 ntBASIC15□□□□□ -0.01
COL5A1P20908 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15□□□□□ -0.01
COL5A1P20908 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 AC084018.2-201ENST00000613093 2607 ntBASIC15□□□□□ -0.01
COL5A1P20908 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15□□□□□ -0.01
COL5A1P20908 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15□□□□□ -0.01
COL5A1P20908 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15□□□□□ -0.01
COL5A1P20908 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
COL5A1P20908 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15□□□□□ -0.01
COL5A1P20908 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
COL5A1P20908 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15□□□□□ -0.01
COL5A1P20908 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15□□□□□ -0.01
COL5A1P20908 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15□□□□□ -0.01
COL5A1P20908 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15□□□□□ -0.01
COL5A1P20908 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15□□□□□ -0.01
COL5A1P20908 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15□□□□□ -0.01
COL5A1P20908 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
COL5A1P20908 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
COL5A1P20908 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
COL5A1P20908 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
COL5A1P20908 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15□□□□□ -0.01
COL5A1P20908 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.99□□□□□ -0.01
COL5A1P20908 AC092364.2-201ENST00000596710 2692 ntBASIC14.99□□□□□ -0.01
COL5A1P20908 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC14.99□□□□□ -0.01
COL5A1P20908 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL5A1P20908 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL5A1P20908 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
COL5A1P20908 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL5A1P20908 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
COL5A1P20908 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL5A1P20908 RNA5SP486-201ENST00000515961 83 ntBASIC14.99□□□□□ -0.01
COL5A1P20908 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.99□□□□□ -0.01
COL5A1P20908 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.99□□□□□ -0.01
COL5A1P20908 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL5A1P20908 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC14.99□□□□□ -0.01
COL5A1P20908 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.99□□□□□ -0.01
COL5A1P20908 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.99□□□□□ -0.01
COL5A1P20908 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.99□□□□□ -0.01
COL5A1P20908 MIR6727-201ENST00000620702 65 ntBASIC14.99□□□□□ -0.01
COL5A1P20908 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL5A1P20908 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms