Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
HOXD4P09016 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 AL080243.2-201ENST00000418783 582 ntBASIC14.52□□□□□ -0.09
HOXD4P09016 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.52□□□□□ -0.09
HOXD4P09016 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 MEIS3P1-201ENST00000495167 958 ntBASIC14.52□□□□□ -0.09
HOXD4P09016 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXD4P09016 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.52□□□□□ -0.09
HOXD4P09016 BANF1P1-201ENST00000553684 263 ntBASIC14.52□□□□□ -0.09
HOXD4P09016 AL844908.2-201ENST00000609461 460 ntBASIC14.52□□□□□ -0.09
HOXD4P09016 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
HOXD4P09016 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
HOXD4P09016 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXD4P09016 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HOXD4P09016 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HOXD4P09016 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
HOXD4P09016 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXD4P09016 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
HOXD4P09016 AL391825.1-201ENST00000457671 1364 ntBASIC14.51□□□□□ -0.09
HOXD4P09016 U82695.1-201ENST00000635752 1889 ntBASIC14.51□□□□□ -0.09
HOXD4P09016 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.51□□□□□ -0.09
HOXD4P09016 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXD4P09016 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXD4P09016 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.51□□□□□ -0.09
HOXD4P09016 AC009407.1-201ENST00000568958 598 ntBASIC14.51□□□□□ -0.09
HOXD4P09016 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.51□□□□□ -0.09
HOXD4P09016 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
HOXD4P09016 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXD4P09016 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXD4P09016 MIR6069-201ENST00000620069 79 ntBASIC14.51□□□□□ -0.09
HOXD4P09016 AC138035.3-201ENST00000622706 2791 ntBASIC14.51□□□□□ -0.09
HOXD4P09016 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HOXD4P09016 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXD4P09016 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXD4P09016 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXD4P09016 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD4P09016 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HOXD4P09016 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
HOXD4P09016 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 CU639417.3-201ENST00000624240 1404 ntBASIC14.5□□□□□ -0.09
HOXD4P09016 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.5□□□□□ -0.09
HOXD4P09016 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.5□□□□□ -0.09
HOXD4P09016 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.5□□□□□ -0.09
HOXD4P09016 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.5□□□□□ -0.09
HOXD4P09016 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.5□□□□□ -0.09
HOXD4P09016 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HOXD4P09016 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.5□□□□□ -0.09
HOXD4P09016 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.5□□□□□ -0.09
HOXD4P09016 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.5□□□□□ -0.09
HOXD4P09016 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HOXD4P09016 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
HOXD4P09016 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
HOXD4P09016 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.5□□□□□ -0.09
HOXD4P09016 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms