Protein–RNA interactions for Protein: O94985

CLSTN1, Calsyntenin-1, humanhuman

Predictions only

Length 981 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1O94985 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CLSTN1O94985 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 LINC01144-201ENST00000626198 1710 ntBASIC17.76■□□□□ 0.43
CLSTN1O94985 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CLSTN1O94985 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.76■□□□□ 0.43
CLSTN1O94985 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.76■□□□□ 0.43
CLSTN1O94985 AC005237.2-201ENST00000434368 219 ntBASIC17.76■□□□□ 0.43
CLSTN1O94985 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.76■□□□□ 0.43
CLSTN1O94985 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.76■□□□□ 0.43
CLSTN1O94985 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.76■□□□□ 0.43
CLSTN1O94985 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.76■□□□□ 0.43
CLSTN1O94985 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.76■□□□□ 0.43
CLSTN1O94985 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CLSTN1O94985 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 AC067750.1-201ENST00000608826 6545 ntBASIC17.76■□□□□ 0.43
CLSTN1O94985 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLSTN1O94985 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 AC099063.4-201ENST00000641099 1602 ntBASIC17.76■□□□□ 0.43
CLSTN1O94985 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLSTN1O94985 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.76■□□□□ 0.43
CLSTN1O94985 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.75■□□□□ 0.43
CLSTN1O94985 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
CLSTN1O94985 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.75■□□□□ 0.43
CLSTN1O94985 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 AC092384.3-202ENST00000564646 2873 ntBASIC17.75■□□□□ 0.43
CLSTN1O94985 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.75■□□□□ 0.43
CLSTN1O94985 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CLSTN1O94985 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLSTN1O94985 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.74■□□□□ 0.43
CLSTN1O94985 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.74■□□□□ 0.43
CLSTN1O94985 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLSTN1O94985 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.74■□□□□ 0.43
CLSTN1O94985 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
CLSTN1O94985 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.74■□□□□ 0.43
CLSTN1O94985 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CLSTN1O94985 AC126177.1-201ENST00000547829 2218 ntBASIC17.74■□□□□ 0.43
CLSTN1O94985 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.74■□□□□ 0.43
CLSTN1O94985 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLSTN1O94985 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CLSTN1O94985 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
CLSTN1O94985 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CLSTN1O94985 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLSTN1O94985 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms