Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.53■□□□□ 0.56
CDKL5O76039 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.53■□□□□ 0.56
CDKL5O76039 FO393414.2-201ENST00000405153 598 ntBASIC18.53■□□□□ 0.56
CDKL5O76039 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.53■□□□□ 0.56
CDKL5O76039 CICP13-201ENST00000422015 2789 ntBASIC18.53■□□□□ 0.56
CDKL5O76039 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 MTND6P24-201ENST00000440466 518 ntBASIC18.53■□□□□ 0.56
CDKL5O76039 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.53■□□□□ 0.56
CDKL5O76039 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 HLA-J-203ENST00000494367 1087 ntBASIC18.53■□□□□ 0.56
CDKL5O76039 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 MIR4313-201ENST00000580760 101 ntBASIC18.53■□□□□ 0.56
CDKL5O76039 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 AL133215.2-201ENST00000609242 977 ntBASIC18.53■□□□□ 0.56
CDKL5O76039 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.53■□□□□ 0.56
CDKL5O76039 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.53■□□□□ 0.56
CDKL5O76039 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDKL5O76039 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
CDKL5O76039 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 AC020658.6-201ENST00000623564 1870 ntBASIC18.52■□□□□ 0.56
CDKL5O76039 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.52■□□□□ 0.56
CDKL5O76039 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.52■□□□□ 0.56
CDKL5O76039 AC069262.1-201ENST00000539058 672 ntBASIC18.52■□□□□ 0.56
CDKL5O76039 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.52■□□□□ 0.56
CDKL5O76039 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.52■□□□□ 0.56
CDKL5O76039 AL691403.2-201ENST00000618460 490 ntBASIC18.52■□□□□ 0.56
CDKL5O76039 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.52■□□□□ 0.56
CDKL5O76039 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDKL5O76039 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.52■□□□□ 0.55
CDKL5O76039 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDKL5O76039 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CDKL5O76039 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.52■□□□□ 0.55
CDKL5O76039 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.52■□□□□ 0.55
CDKL5O76039 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.55
CDKL5O76039 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CDKL5O76039 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDKL5O76039 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDKL5O76039 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDKL5O76039 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.51■□□□□ 0.55
CDKL5O76039 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.51■□□□□ 0.55
CDKL5O76039 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CDKL5O76039 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.51■□□□□ 0.55
CDKL5O76039 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.51■□□□□ 0.55
CDKL5O76039 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.51■□□□□ 0.55
CDKL5O76039 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CDKL5O76039 TSEN15P1-201ENST00000423257 515 ntBASIC18.51■□□□□ 0.55
CDKL5O76039 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.51■□□□□ 0.55
CDKL5O76039 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.51■□□□□ 0.55
CDKL5O76039 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
CDKL5O76039 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.51■□□□□ 0.55
CDKL5O76039 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.51■□□□□ 0.55
CDKL5O76039 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.51■□□□□ 0.55
CDKL5O76039 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.51■□□□□ 0.55
CDKL5O76039 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDKL5O76039 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms