Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RMDN3-204ENST00000558232 1033 ntTSL 514.65□□□□□ -0.061e-8■■■■■ 103.4
SF3B1O75533 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.071e-8■■■■■ 103.4
SF3B1O75533 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.072e-6■■■■■ 103.4
SF3B1O75533 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.59□□□□□ -0.076e-6■■■■■ 103.4
SF3B1O75533 TBKBP1-202ENST00000537587 705 ntTSL 314.58□□□□□ -0.081e-8■■■■■ 103.4
SF3B1O75533 STRN4-206ENST00000594287 951 ntTSL 514.58□□□□□ -0.086e-6■■■■■ 103.4
SF3B1O75533 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.58□□□□□ -0.086e-6■■■■■ 103.4
SF3B1O75533 GLB1L2-202ENST00000529077 5621 ntTSL 1 (best)14.56□□□□□ -0.086e-6■■■■■ 103.4
SF3B1O75533 COG7-206ENST00000569635 474 ntTSL 514.56□□□□□ -0.086e-6■■■■■ 103.4
SF3B1O75533 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.081e-8■■■■■ 103.4
SF3B1O75533 CD151-218ENST00000530726 1407 ntTSL 514.54□□□□□ -0.081e-8■■■■■ 103.4
SF3B1O75533 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.086e-6■■■■■ 103.4
SF3B1O75533 TACC1-228ENST00000524193 685 ntTSL 314.49□□□□□ -0.091e-8■■■■■ 103.4
SF3B1O75533 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC14.49□□□□□ -0.096e-6■■■■■ 103.4
SF3B1O75533 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC14.48□□□□□ -0.096e-6■■■■■ 103.4
SF3B1O75533 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.16e-6■■■■■ 103.4
SF3B1O75533 RECQL5-213ENST00000581825 793 ntTSL 314.39□□□□□ -0.111e-8■■■■■ 103.4
SF3B1O75533 TACC1-218ENST00000521935 967 ntTSL 214.39□□□□□ -0.111e-8■■■■■ 103.4
SF3B1O75533 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC14.38□□□□□ -0.111e-8■■■■■ 103.4
SF3B1O75533 TACC1-214ENST00000521528 656 ntTSL 414.38□□□□□ -0.111e-8■■■■■ 103.4
SF3B1O75533 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.112e-6■■■■■ 103.4
SF3B1O75533 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC14.38□□□□□ -0.112e-6■■■■■ 103.4
SF3B1O75533 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.34□□□□□ -0.112e-7■■■■■ 103.4
SF3B1O75533 GORASP1-205ENST00000419156 814 ntTSL 514.34□□□□□ -0.116e-6■■■■■ 103.4
SF3B1O75533 MAU2-211ENST00000589947 670 ntTSL 414.34□□□□□ -0.111e-8■■■■■ 103.4
SF3B1O75533 RMND5B-206ENST00000508647 562 ntTSL 414.27□□□□□ -0.126e-6■■■■■ 103.4
SF3B1O75533 SLC43A1-203ENST00000525764 556 ntTSL 314.25□□□□□ -0.136e-6■■■■■ 103.4
SF3B1O75533 MED29-205ENST00000599417 2941 ntTSL 214.24□□□□□ -0.132e-12■■■■■ 103.4
SF3B1O75533 CHD3-206ENST00000452447 1573 ntTSL 514.18□□□□□ -0.146e-6■■■■■ 103.4
SF3B1O75533 RNF40-208ENST00000565995 586 ntTSL 414.17□□□□□ -0.141e-8■■■■■ 103.4
SF3B1O75533 STK11IP-205ENST00000459692 854 ntTSL 514.16□□□□□ -0.141e-8■■■■■ 103.4
SF3B1O75533 ETFDH-205ENST00000510353 987 ntTSL 1 (best)14.16□□□□□ -0.146e-6■■■■■ 103.4
SF3B1O75533 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC14.15□□□□□ -0.146e-6■■■■■ 103.4
SF3B1O75533 TLN1-207ENST00000489255 798 ntTSL 214.15□□□□□ -0.151e-8■■■■■ 103.4
SF3B1O75533 MKL1-213ENST00000620651 3757 ntTSL 5 BASIC14.13□□□□□ -0.156e-6■■■■■ 103.4
SF3B1O75533 TFE3-204ENST00000493583 3279 ntTSL 214.11□□□□□ -0.156e-6■■■■■ 103.4
SF3B1O75533 FAM126B-206ENST00000474118 771 ntTSL 314.09□□□□□ -0.156e-6■■■■■ 103.4
SF3B1O75533 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.166e-6■■■■■ 103.4
SF3B1O75533 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.161e-8■■■■■ 103.4
SF3B1O75533 TBC1D20-204ENST00000494633 3820 ntTSL 214.02□□□□□ -0.171e-8■■■■■ 103.4
SF3B1O75533 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.171e-8■■■■■ 103.4
SF3B1O75533 EXOSC7-204ENST00000467846 1149 ntTSL 214.01□□□□□ -0.171e-6■■■■■ 103.4
SF3B1O75533 RECQL5-205ENST00000443199 3089 ntTSL 1 (best)14.01□□□□□ -0.171e-8■■■■■ 103.4
SF3B1O75533 ATP5G2-203ENST00000495596 1976 ntTSL 1 (best)13.98□□□□□ -0.176e-6■■■■■ 103.4
SF3B1O75533 CHD3-210ENST00000479080 519 ntTSL 513.97□□□□□ -0.176e-6■■■■■ 103.4
SF3B1O75533 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.172e-12■■■■■ 103.4
SF3B1O75533 PGAM5-202ENST00000454808 1084 ntTSL 3 BASIC13.96□□□□□ -0.171e-8■■■■■ 103.4
SF3B1O75533 PIGG-215ENST00000508562 570 ntTSL 413.94□□□□□ -0.181e-8■■■■■ 103.4
SF3B1O75533 PLEKHH1-207ENST00000558981 2146 ntTSL 213.94□□□□□ -0.181e-8■■■■■ 103.4
SF3B1O75533 PNP-208ENST00000557229 992 ntTSL 1 (best)13.92□□□□□ -0.181e-8■■■■■ 103.4
SF3B1O75533 C7orf49-208ENST00000481410 976 ntTSL 213.91□□□□□ -0.186e-6■■■■■ 103.4
SF3B1O75533 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC13.88□□□□□ -0.195e-6■■■■■ 103.4
SF3B1O75533 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.196e-6■■■■■ 103.4
SF3B1O75533 ARHGEF3-206ENST00000468727 667 ntTSL 313.87□□□□□ -0.191e-8■■■■■ 103.4
SF3B1O75533 XPO6-207ENST00000565284 662 ntTSL 213.86□□□□□ -0.191e-8■■■■■ 103.4
SF3B1O75533 EXOSC7-205ENST00000468667 831 ntTSL 513.86□□□□□ -0.191e-6■■■■■ 103.4
SF3B1O75533 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.196e-6■■■■■ 103.4
SF3B1O75533 ATP2A2-211ENST00000552636 529 ntTSL 4 BASIC13.84□□□□□ -0.191e-8■■■■■ 103.4
SF3B1O75533 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.23e-6■■■■■ 103.4
SF3B1O75533 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.26e-6■■■■■ 103.4
SF3B1O75533 TACC1-208ENST00000520340 1976 ntTSL 5 BASIC13.81□□□□□ -0.21e-8■■■■■ 103.4
SF3B1O75533 ZNF268-219ENST00000611984 583 ntTSL 5 BASIC13.8□□□□□ -0.26e-6■■■■■ 103.4
SF3B1O75533 KIF13B-202ENST00000522355 2630 ntTSL 213.8□□□□□ -0.26e-6■■■■■ 103.4
SF3B1O75533 MKL1-204ENST00000402630 747 ntTSL 2 BASIC13.79□□□□□ -0.26e-6■■■■■ 103.4
SF3B1O75533 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC13.79□□□□□ -0.26e-6■■■■■ 103.4
SF3B1O75533 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.21e-6■■■■■ 103.4
SF3B1O75533 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC13.74□□□□□ -0.211e-8■■■■■ 103.4
SF3B1O75533 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.212e-7■■■■■ 103.4
SF3B1O75533 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.71□□□□□ -0.223e-6■■■■■ 103.4
SF3B1O75533 NT5DC2-212ENST00000487779 536 ntTSL 313.7□□□□□ -0.226e-6■■■■■ 103.4
SF3B1O75533 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC13.69□□□□□ -0.221e-8■■■■■ 103.4
SF3B1O75533 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC13.68□□□□□ -0.222e-6■■■■■ 103.4
SF3B1O75533 ZNF143-203ENST00000396602 2947 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.226e-6■■■■■ 103.4
SF3B1O75533 NCKIPSD-203ENST00000415281 803 ntTSL 313.67□□□□□ -0.221e-8■■■■■ 103.4
SF3B1O75533 SHCBP1-204ENST00000565887 603 ntTSL 513.65□□□□□ -0.226e-6■■■■■ 103.4
SF3B1O75533 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC13.64□□□□□ -0.236e-6■■■■■ 103.4
SF3B1O75533 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC13.62□□□□□ -0.231e-8■■■■■ 103.4
SF3B1O75533 ZNF268-214ENST00000546126 592 ntTSL 513.61□□□□□ -0.236e-6■■■■■ 103.4
SF3B1O75533 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC13.61□□□□□ -0.236e-6■■■■■ 103.4
SF3B1O75533 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC13.61□□□□□ -0.236e-6■■■■■ 103.4
SF3B1O75533 PSMD9-203ENST00000535293 1773 ntTSL 313.6□□□□□ -0.232e-12■■■■■ 103.4
SF3B1O75533 SEC14L1-215ENST00000587491 2934 ntTSL 213.6□□□□□ -0.232e-12■■■■■ 103.4
SF3B1O75533 STRN4-223ENST00000602223 554 ntTSL 413.6□□□□□ -0.236e-6■■■■■ 103.4
SF3B1O75533 TRIQK-215ENST00000522903 556 ntTSL 413.59□□□□□ -0.236e-6■■■■■ 103.4
SF3B1O75533 TRIQK-216ENST00000522925 559 ntTSL 413.59□□□□□ -0.236e-6■■■■■ 103.4
SF3B1O75533 RENBP-209ENST00000471056 398 ntTSL 513.58□□□□□ -0.246e-6■■■■■ 103.4
SF3B1O75533 NKIRAS2-205ENST00000393881 1598 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.241e-8■■■■■ 103.4
SF3B1O75533 SMIM12-203ENST00000426886 2618 ntTSL 1 (best)13.57□□□□□ -0.246e-6■■■■■ 103.4
SF3B1O75533 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC13.52□□□□□ -0.256e-6■■■■■ 103.4
SF3B1O75533 JMJD8-215ENST00000570037 870 ntTSL 313.51□□□□□ -0.256e-6■■■■■ 103.4
SF3B1O75533 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.5□□□□□ -0.252e-6■■■■■ 103.4
SF3B1O75533 MPDU1-226ENST00000585188 863 ntTSL 313.49□□□□□ -0.251e-8■■■■■ 103.4
SF3B1O75533 MPDU1-203ENST00000396501 1125 ntTSL 2 BASIC13.49□□□□□ -0.251e-8■■■■■ 103.4
SF3B1O75533 MPDU1-217ENST00000578267 582 ntTSL 313.49□□□□□ -0.251e-8■■■■■ 103.4
SF3B1O75533 RAB11FIP4-210ENST00000585058 5824 ntTSL 213.48□□□□□ -0.251e-8■■■■■ 103.4
SF3B1O75533 SUCLG1-204ENST00000483605 655 ntTSL 313.48□□□□□ -0.256e-6■■■■■ 103.4
SF3B1O75533 AC004702.1-201ENST00000580225 195 ntTSL 5 BASIC13.47□□□□□ -0.251e-8■■■■■ 103.4
SF3B1O75533 TACC1-223ENST00000522904 1724 ntTSL 513.46□□□□□ -0.261e-8■■■■■ 103.4
SF3B1O75533 CCND1-202ENST00000535993 568 ntTSL 213.44□□□□□ -0.266e-6■■■■■ 103.4
SF3B1O75533 COA1-206ENST00000418140 1372 ntTSL 1 (best)13.44□□□□□ -0.261e-8■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 2613.4 ms