Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VPS4BO75351 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.7■□□□□ 0.1
VPS4BO75351 TERF1P3-201ENST00000505638 1227 ntBASIC15.7■□□□□ 0.1
VPS4BO75351 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 AC068137.2-201ENST00000605408 478 ntBASIC15.7■□□□□ 0.1
VPS4BO75351 AC092902.6-201ENST00000641783 218 ntBASIC15.7■□□□□ 0.1
VPS4BO75351 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 AC023157.3-201ENST00000619086 2088 ntBASIC15.7■□□□□ 0.1
VPS4BO75351 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
VPS4BO75351 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
VPS4BO75351 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4BO75351 SSR4P1-203ENST00000599569 2260 ntBASIC15.69■□□□□ 0.1
VPS4BO75351 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VPS4BO75351 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4BO75351 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4BO75351 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4BO75351 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.69■□□□□ 0.1
VPS4BO75351 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4BO75351 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4BO75351 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS4BO75351 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4BO75351 AC022145.2-201ENST00000598203 171 ntBASIC15.69■□□□□ 0.1
VPS4BO75351 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4BO75351 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4BO75351 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4BO75351 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4BO75351 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
VPS4BO75351 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS4BO75351 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4BO75351 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4BO75351 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4BO75351 AC144831.1-201ENST00000573312 2656 ntBASIC15.69■□□□□ 0.1
VPS4BO75351 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 AC099063.4-201ENST00000641099 1602 ntBASIC15.68■□□□□ 0.1
VPS4BO75351 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS4BO75351 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS4BO75351 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS4BO75351 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.68■□□□□ 0.1
VPS4BO75351 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS4BO75351 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS4BO75351 BASP1P1-201ENST00000430708 665 ntBASIC15.68■□□□□ 0.1
VPS4BO75351 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4BO75351 AL513480.1-201ENST00000451731 511 ntBASIC15.68■□□□□ 0.1
VPS4BO75351 KRT18P34-201ENST00000488218 1270 ntBASIC15.68■□□□□ 0.1
VPS4BO75351 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS4BO75351 AC093520.2-201ENST00000561830 333 ntBASIC15.68■□□□□ 0.1
VPS4BO75351 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms