Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LMX1BO60663 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
LMX1BO60663 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LMX1BO60663 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LMX1BO60663 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LMX1BO60663 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.07□□□□□ -0.16
LMX1BO60663 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 CNN2P2-201ENST00000443536 909 ntBASIC14.07□□□□□ -0.16
LMX1BO60663 CNN2P3-201ENST00000450201 906 ntBASIC14.07□□□□□ -0.16
LMX1BO60663 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.07□□□□□ -0.16
LMX1BO60663 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.07□□□□□ -0.16
LMX1BO60663 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.07□□□□□ -0.16
LMX1BO60663 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.07□□□□□ -0.16
LMX1BO60663 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LMX1BO60663 AL136317.3-201ENST00000618497 906 ntBASIC14.07□□□□□ -0.16
LMX1BO60663 Z92544.3-201ENST00000624747 417 ntBASIC14.07□□□□□ -0.16
LMX1BO60663 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LMX1BO60663 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.07□□□□□ -0.16
LMX1BO60663 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.07□□□□□ -0.16
LMX1BO60663 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.07□□□□□ -0.16
LMX1BO60663 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
LMX1BO60663 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 AC073439.1-201ENST00000624121 1774 ntBASIC14.06□□□□□ -0.16
LMX1BO60663 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
LMX1BO60663 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.06□□□□□ -0.16
LMX1BO60663 AL355306.1-201ENST00000415580 579 ntBASIC14.06□□□□□ -0.16
LMX1BO60663 BASP1P1-201ENST00000430708 665 ntBASIC14.06□□□□□ -0.16
LMX1BO60663 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 ADH5P3-201ENST00000433842 1137 ntBASIC14.06□□□□□ -0.16
LMX1BO60663 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.06□□□□□ -0.16
LMX1BO60663 AL592309.1-201ENST00000443127 649 ntBASIC14.06□□□□□ -0.16
LMX1BO60663 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.06□□□□□ -0.16
LMX1BO60663 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.06□□□□□ -0.16
LMX1BO60663 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.06□□□□□ -0.16
LMX1BO60663 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.06□□□□□ -0.16
LMX1BO60663 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
LMX1BO60663 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
LMX1BO60663 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms