Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
SGCEO43556 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
SGCEO43556 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SGCEO43556 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.21□□□□□ -0.14
SGCEO43556 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SGCEO43556 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.14
SGCEO43556 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 ELL2P1-201ENST00000413990 1906 ntBASIC14.2□□□□□ -0.14
SGCEO43556 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 CEND1P1-201ENST00000451006 455 ntBASIC14.2□□□□□ -0.14
SGCEO43556 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.2□□□□□ -0.14
SGCEO43556 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 AC079140.1-201ENST00000508039 487 ntBASIC14.2□□□□□ -0.14
SGCEO43556 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 AC024267.1-201ENST00000582320 895 ntBASIC14.2□□□□□ -0.14
SGCEO43556 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.2□□□□□ -0.14
SGCEO43556 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.2□□□□□ -0.14
SGCEO43556 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 AC069224.1-201ENST00000566372 1715 ntBASIC14.2□□□□□ -0.14
SGCEO43556 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SGCEO43556 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.2□□□□□ -0.14
SGCEO43556 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SGCEO43556 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.19□□□□□ -0.14
SGCEO43556 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.19□□□□□ -0.14
SGCEO43556 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
SGCEO43556 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.19□□□□□ -0.14
SGCEO43556 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SGCEO43556 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.19□□□□□ -0.14
SGCEO43556 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
SGCEO43556 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.19□□□□□ -0.14
SGCEO43556 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SGCEO43556 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 225.9 ms