Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
MSH4O15457 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.82■□□□□ 0.44
MSH4O15457 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.82■□□□□ 0.44
MSH4O15457 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.82■□□□□ 0.44
MSH4O15457 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
MSH4O15457 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSH4O15457 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
MSH4O15457 PRAL-201ENST00000624952 3286 ntBASIC17.82■□□□□ 0.44
MSH4O15457 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.81■□□□□ 0.44
MSH4O15457 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
MSH4O15457 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 AC008894.3-201ENST00000624324 3103 ntBASIC17.81■□□□□ 0.44
MSH4O15457 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 SLC7A15P-201ENST00000424028 1363 ntBASIC17.81■□□□□ 0.44
MSH4O15457 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
MSH4O15457 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.81■□□□□ 0.44
MSH4O15457 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 SPDYE22P-201ENST00000582158 798 ntBASIC17.81■□□□□ 0.44
MSH4O15457 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
MSH4O15457 CHCHD2P3-201ENST00000603038 451 ntBASIC17.81■□□□□ 0.44
MSH4O15457 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.81■□□□□ 0.44
MSH4O15457 AL158212.4-201ENST00000624062 1286 ntBASIC17.81■□□□□ 0.44
MSH4O15457 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
MSH4O15457 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.81■□□□□ 0.44
MSH4O15457 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSH4O15457 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
MSH4O15457 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
MSH4O15457 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
MSH4O15457 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.8■□□□□ 0.44
MSH4O15457 AL353779.1-201ENST00000434793 351 ntBASIC17.8■□□□□ 0.44
MSH4O15457 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.8■□□□□ 0.44
MSH4O15457 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.8■□□□□ 0.44
MSH4O15457 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.8■□□□□ 0.44
MSH4O15457 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.8■□□□□ 0.44
MSH4O15457 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.8■□□□□ 0.44
MSH4O15457 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
MSH4O15457 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.8■□□□□ 0.44
MSH4O15457 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSH4O15457 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.8■□□□□ 0.44
MSH4O15457 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.79■□□□□ 0.44
MSH4O15457 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH4O15457 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH4O15457 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSH4O15457 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH4O15457 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSH4O15457 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms