Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
ZC3H4Q9UPT8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
ZC3H4Q9UPT8 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZC3H4Q9UPT8 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZC3H4Q9UPT8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZC3H4Q9UPT8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 KRT18P64-201ENST00000434946 1219 ntBASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 KRT18P43-201ENST00000469825 1281 ntBASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 MIR3907-201ENST00000579424 151 ntBASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 AC018635.2-201ENST00000608625 364 ntBASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 AC020763.4-201ENST00000623414 4170 ntBASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 DRD5P1-201ENST00000456605 1438 ntBASIC19.11■□□□□ 0.65
ZC3H4Q9UPT8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 MIR4750-201ENST00000584564 56 ntBASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 AP003419.4-201ENST00000616071 517 ntBASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 AC079336.7-201ENST00000623428 1078 ntBASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC19.1■□□□□ 0.65
ZC3H4Q9UPT8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 AC079178.1-201ENST00000420915 656 ntBASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZC3H4Q9UPT8 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms