Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 SPDYE17-201ENST00000412399 783 ntBASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 CNN2P2-201ENST00000443536 909 ntBASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 CNN2P3-201ENST00000450201 906 ntBASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 PHKG1P2-201ENST00000457537 863 ntBASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 AL136317.3-201ENST00000618497 906 ntBASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 AZGP1P1-201ENST00000411909 902 ntBASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 AC025678.2-201ENST00000562061 970 ntBASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 AL596257.1-201ENST00000641463 2694 ntBASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
AP4E1Q9UPM8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
AP4E1Q9UPM8 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms