Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 HLA-DPB2-205ENST00000435074 1188 ntBASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 AC036164.1-201ENST00000570544 333 ntBASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 LINC01115-203ENST00000606068 577 ntBASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 AC105020.1-201ENST00000435356 2205 ntBASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 AC060834.1-201ENST00000443027 2032 ntBASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 PCDHB19P-201ENST00000570871 2371 ntBASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LIMD1Q9UGP4 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 AC005229.1-201ENST00000392885 409 ntBASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 AL442647.2-201ENST00000429864 857 ntBASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 RPL7P3-201ENST00000441388 714 ntBASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 FO681548.1-201ENST00000455617 1132 ntBASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 CYP4F24P-201ENST00000586049 1580 ntBASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMD1Q9UGP4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 PFN1P12-201ENST00000455938 534 ntBASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 MIR3615-201ENST00000581999 87 ntBASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMD1Q9UGP4 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms