Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.34■□□□□ 0.21
TDP1Q9NUW8 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TDP1Q9NUW8 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TDP1Q9NUW8 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TDP1Q9NUW8 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TDP1Q9NUW8 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.34■□□□□ 0.21
TDP1Q9NUW8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TDP1Q9NUW8 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.33■□□□□ 0.21
TDP1Q9NUW8 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 KRT223P-202ENST00000449164 1292 ntBASIC16.33■□□□□ 0.2
TDP1Q9NUW8 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 AC104989.1-201ENST00000519711 778 ntBASIC16.33■□□□□ 0.2
TDP1Q9NUW8 SNX29P1-201ENST00000548357 1007 ntBASIC16.33■□□□□ 0.2
TDP1Q9NUW8 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 AC124283.3-201ENST00000570869 594 ntBASIC16.33■□□□□ 0.2
TDP1Q9NUW8 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
TDP1Q9NUW8 AC018892.3-201ENST00000623986 2499 ntBASIC16.33■□□□□ 0.2
TDP1Q9NUW8 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 AC120045.2-201ENST00000567334 178 ntBASIC16.32■□□□□ 0.2
TDP1Q9NUW8 AL022328.1-201ENST00000610050 478 ntBASIC16.32■□□□□ 0.2
TDP1Q9NUW8 MIR6799-201ENST00000620297 69 ntBASIC16.32■□□□□ 0.2
TDP1Q9NUW8 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 AC079328.2-201ENST00000561241 3354 ntBASIC16.32■□□□□ 0.2
TDP1Q9NUW8 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TDP1Q9NUW8 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms