Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 LINC02447-202ENST00000501888 2146 ntBASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CHMP1AQ9HD42 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 AKR1C7P-201ENST00000305623 895 ntBASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 MIR648-201ENST00000385046 94 ntBASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 AC005593.1-201ENST00000624894 515 ntBASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 CDC14C-201ENST00000428251 1719 ntBASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 AC005622.1-201ENST00000636801 1703 ntBASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CHMP1AQ9HD42 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CHMP1AQ9HD42 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.83□□□□□ -0.19
CHMP1AQ9HD42 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.83□□□□□ -0.19
CHMP1AQ9HD42 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CHMP1AQ9HD42 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 MRPL20P1-201ENST00000400819 433 ntBASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 AF238378.1-201ENST00000526806 358 ntBASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 AC008667.4-201ENST00000607370 168 ntBASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms