Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 RPSAP43-201ENST00000402237 625 ntBASIC15.26■□□□□ 0.03
BRF2Q9HAW0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 BX842568.4-201ENST00000421222 227 ntBASIC15.26■□□□□ 0.03
BRF2Q9HAW0 FAM58DP-201ENST00000428076 619 ntBASIC15.26■□□□□ 0.03
BRF2Q9HAW0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 AC093520.2-201ENST00000561830 333 ntBASIC15.26■□□□□ 0.03
BRF2Q9HAW0 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.26■□□□□ 0.03
BRF2Q9HAW0 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.26■□□□□ 0.03
BRF2Q9HAW0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 UPF3AP3-201ENST00000420996 769 ntBASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC112482.1-201ENST00000492080 688 ntBASIC15.25■□□□□ 0.03
BRF2Q9HAW0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC105021.1-202ENST00000570572 669 ntBASIC15.25■□□□□ 0.03
BRF2Q9HAW0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC009093.7-201ENST00000623853 1223 ntBASIC15.25■□□□□ 0.03
BRF2Q9HAW0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC013268.4-201ENST00000637413 2228 ntBASIC15.25■□□□□ 0.03
BRF2Q9HAW0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRF2Q9HAW0 AC092127.1-201ENST00000567093 3455 ntBASIC15.25■□□□□ 0.03
BRF2Q9HAW0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms