Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC138969.3-201ENST00000546612 1459 ntBASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 AC138932.2-201ENST00000548268 1459 ntBASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 AC126755.4-201ENST00000549796 1459 ntBASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
TRAIPQ9BWF2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 Z97205.2-201ENST00000564697 1639 ntBASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 RRP7BP-205ENST00000566851 833 ntBASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 ALOX12P2-203ENST00000570921 1945 ntBASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAIPQ9BWF2 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 DGCR5-201ENST00000399539 862 ntBASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.47■□□□□ 0.39
TRAIPQ9BWF2 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC007950.2-201ENST00000615045 2347 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms