Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 AC023157.3-201ENST00000619086 2088 ntBASIC12.01□□□□□ -0.49
LINC00477Q96M19 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 AC074386.1-202ENST00000463561 864 ntBASIC12.01□□□□□ -0.49
LINC00477Q96M19 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PP7080-204ENST00000510714 601 ntTSL 3 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 RNA5SP419-201ENST00000515908 135 ntBASIC12.01□□□□□ -0.49
LINC00477Q96M19 PENK-208ENST00000523051 772 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 AC112191.1-201ENST00000523689 701 ntBASIC12.01□□□□□ -0.49
LINC00477Q96M19 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 KRT19P2-202ENST00000557173 1012 ntBASIC12.01□□□□□ -0.49
LINC00477Q96M19 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
LINC00477Q96M19 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC00477Q96M19 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12□□□□□ -0.49
LINC00477Q96M19 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
LINC00477Q96M19 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12□□□□□ -0.49
LINC00477Q96M19 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12□□□□□ -0.49
LINC00477Q96M19 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
LINC00477Q96M19 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12□□□□□ -0.49
LINC00477Q96M19 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
LINC00477Q96M19 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms