Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AC092933.1-201ENST00000393644 945 ntBASIC16.16■□□□□ 0.18
CHFRQ96EP1 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AC134915.1-201ENST00000426461 574 ntBASIC16.16■□□□□ 0.18
CHFRQ96EP1 ACTBP11-201ENST00000436287 1126 ntBASIC16.16■□□□□ 0.18
CHFRQ96EP1 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 KLF2P4-201ENST00000451959 1225 ntBASIC16.16■□□□□ 0.18
CHFRQ96EP1 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 AC011676.5-201ENST00000624864 2660 ntBASIC16.16■□□□□ 0.18
CHFRQ96EP1 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CHFRQ96EP1 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHFRQ96EP1 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 AC005229.1-201ENST00000392885 409 ntBASIC16.15■□□□□ 0.18
CHFRQ96EP1 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 AC068587.3-201ENST00000526613 355 ntBASIC16.15■□□□□ 0.18
CHFRQ96EP1 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 AC120045.2-201ENST00000567334 178 ntBASIC16.15■□□□□ 0.18
CHFRQ96EP1 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 AL049840.4-201ENST00000602422 811 ntBASIC16.15■□□□□ 0.18
CHFRQ96EP1 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 AL022328.1-201ENST00000610050 478 ntBASIC16.15■□□□□ 0.18
CHFRQ96EP1 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 AC005252.2-201ENST00000624630 1141 ntBASIC16.15■□□□□ 0.18
CHFRQ96EP1 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.15■□□□□ 0.18
CHFRQ96EP1 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHFRQ96EP1 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CHFRQ96EP1 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.14■□□□□ 0.18
CHFRQ96EP1 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CHFRQ96EP1 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
CHFRQ96EP1 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 AL607033.1-201ENST00000623900 1599 ntBASIC16.14■□□□□ 0.17
CHFRQ96EP1 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.14■□□□□ 0.17
CHFRQ96EP1 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHFRQ96EP1 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms