Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 AL033527.5-202ENST00000641632 1098 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 AC092171.3-201ENST00000610122 2651 ntBASIC14.87□□□□□ -0.03
BEST3Q8N1M1 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BEST3Q8N1M1 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AC005034.1-201ENST00000426657 489 ntBASIC14.86□□□□□ -0.03
BEST3Q8N1M1 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 ZNF890P-202ENST00000530367 1156 ntBASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AC005225.4-201ENST00000557330 545 ntBASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AC104794.3-201ENST00000566840 1248 ntBASIC14.86□□□□□ -0.03
BEST3Q8N1M1 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AC027307.3-201ENST00000594262 1100 ntBASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AL662799.1-202ENST00000614205 422 ntBASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AL035252.4-201ENST00000624174 288 ntBASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
BEST3Q8N1M1 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 AC005052.1-201ENST00000625181 2492 ntBASIC14.85□□□□□ -0.03
BEST3Q8N1M1 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 BTBD7P1-201ENST00000447253 1453 ntBASIC14.85□□□□□ -0.03
BEST3Q8N1M1 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
BEST3Q8N1M1 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms