Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXF1Q12946 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
FOXF1Q12946 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.46□□□□□ -0.1
FOXF1Q12946 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.45□□□□□ -0.1
FOXF1Q12946 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 HIST3H2BA-201ENST00000436555 524 ntBASIC14.45□□□□□ -0.1
FOXF1Q12946 MST1L-201ENST00000442552 2185 ntBASIC14.45□□□□□ -0.1
FOXF1Q12946 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
FOXF1Q12946 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 AC027796.2-201ENST00000575326 344 ntBASIC14.45□□□□□ -0.1
FOXF1Q12946 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.45□□□□□ -0.1
FOXF1Q12946 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.45□□□□□ -0.1
FOXF1Q12946 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
FOXF1Q12946 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 PAUPAR-201ENST00000630360 2965 ntBASIC14.45□□□□□ -0.1
FOXF1Q12946 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
FOXF1Q12946 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
FOXF1Q12946 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXF1Q12946 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXF1Q12946 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
FOXF1Q12946 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
FOXF1Q12946 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 AC100757.3-201ENST00000622361 1406 ntBASIC14.44□□□□□ -0.1
FOXF1Q12946 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXF1Q12946 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
FOXF1Q12946 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.44□□□□□ -0.1
FOXF1Q12946 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXF1Q12946 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXF1Q12946 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
FOXF1Q12946 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
FOXF1Q12946 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.44□□□□□ -0.1
FOXF1Q12946 RN7SL618P-201ENST00000477850 296 ntBASIC14.44□□□□□ -0.1
FOXF1Q12946 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.44□□□□□ -0.1
FOXF1Q12946 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXF1Q12946 AL512361.1-201ENST00000554200 418 ntBASIC14.44□□□□□ -0.1
FOXF1Q12946 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXF1Q12946 AL390955.2-201ENST00000603032 514 ntBASIC14.44□□□□□ -0.1
FOXF1Q12946 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXF1Q12946 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
FOXF1Q12946 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXF1Q12946 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.44□□□□□ -0.1
FOXF1Q12946 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXF1Q12946 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXF1Q12946 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXF1Q12946 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms