Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.32□□□□□ -0.12
SCN1BQ07699 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.32□□□□□ -0.12
SCN1BQ07699 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.32□□□□□ -0.12
SCN1BQ07699 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
SCN1BQ07699 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.32□□□□□ -0.12
SCN1BQ07699 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.32□□□□□ -0.12
SCN1BQ07699 RBM17P3-201ENST00000417687 1192 ntBASIC14.32□□□□□ -0.12
SCN1BQ07699 PRYP5-201ENST00000451909 266 ntBASIC14.32□□□□□ -0.12
SCN1BQ07699 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.32□□□□□ -0.12
SCN1BQ07699 AC106795.1-205ENST00000512851 1056 ntBASIC14.32□□□□□ -0.12
SCN1BQ07699 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.32□□□□□ -0.12
SCN1BQ07699 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.32□□□□□ -0.12
SCN1BQ07699 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.32□□□□□ -0.12
SCN1BQ07699 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.32□□□□□ -0.12
SCN1BQ07699 AC008608.2-201ENST00000606089 416 ntBASIC14.32□□□□□ -0.12
SCN1BQ07699 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.32□□□□□ -0.12
SCN1BQ07699 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.32□□□□□ -0.12
SCN1BQ07699 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
SCN1BQ07699 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 AL590787.1-201ENST00000568856 1315 ntBASIC14.32□□□□□ -0.12
SCN1BQ07699 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SCN1BQ07699 AC005912.2-201ENST00000619492 2400 ntBASIC14.32□□□□□ -0.12
SCN1BQ07699 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.32□□□□□ -0.12
SCN1BQ07699 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SCN1BQ07699 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.31□□□□□ -0.12
SCN1BQ07699 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.31□□□□□ -0.12
SCN1BQ07699 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
SCN1BQ07699 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 AC005840.4-201ENST00000541242 2494 ntBASIC14.31□□□□□ -0.12
SCN1BQ07699 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.31□□□□□ -0.12
SCN1BQ07699 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.31□□□□□ -0.12
SCN1BQ07699 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.31□□□□□ -0.12
SCN1BQ07699 AL353135.1-201ENST00000606729 504 ntBASIC14.31□□□□□ -0.12
SCN1BQ07699 AL139288.1-201ENST00000623748 933 ntBASIC14.31□□□□□ -0.12
SCN1BQ07699 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SCN1BQ07699 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.31□□□□□ -0.12
SCN1BQ07699 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SCN1BQ07699 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SCN1BQ07699 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.31□□□□□ -0.12
SCN1BQ07699 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SCN1BQ07699 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
SCN1BQ07699 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.3□□□□□ -0.12
SCN1BQ07699 LINC01144-201ENST00000626198 1710 ntBASIC14.3□□□□□ -0.12
SCN1BQ07699 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.3□□□□□ -0.12
SCN1BQ07699 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.3□□□□□ -0.12
SCN1BQ07699 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.3□□□□□ -0.12
SCN1BQ07699 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SCN1BQ07699 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms