Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HNF4AP41235 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.55■□□□□ 0.08
HNF4AP41235 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.55■□□□□ 0.08
HNF4AP41235 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HNF4AP41235 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.55■□□□□ 0.08
HNF4AP41235 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
HNF4AP41235 HLA-H-201ENST00000383620 1096 ntBASIC15.55■□□□□ 0.08
HNF4AP41235 AL627223.1-201ENST00000416693 442 ntBASIC15.55■□□□□ 0.08
HNF4AP41235 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.55■□□□□ 0.08
HNF4AP41235 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.55■□□□□ 0.08
HNF4AP41235 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.55■□□□□ 0.08
HNF4AP41235 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.55■□□□□ 0.08
HNF4AP41235 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.55■□□□□ 0.08
HNF4AP41235 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
HNF4AP41235 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.55■□□□□ 0.08
HNF4AP41235 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.55■□□□□ 0.08
HNF4AP41235 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.55■□□□□ 0.08
HNF4AP41235 AC084121.4-201ENST00000641598 221 ntBASIC15.55■□□□□ 0.08
HNF4AP41235 AF228730.8-201ENST00000642140 221 ntBASIC15.55■□□□□ 0.08
HNF4AP41235 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 AC067930.6-201ENST00000623257 4947 ntBASIC15.55■□□□□ 0.08
HNF4AP41235 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.55■□□□□ 0.08
HNF4AP41235 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
HNF4AP41235 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
HNF4AP41235 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HNF4AP41235 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.54■□□□□ 0.08
HNF4AP41235 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.54■□□□□ 0.08
HNF4AP41235 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HNF4AP41235 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.54■□□□□ 0.08
HNF4AP41235 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.54■□□□□ 0.08
HNF4AP41235 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
HNF4AP41235 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.54■□□□□ 0.08
HNF4AP41235 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.54■□□□□ 0.08
HNF4AP41235 AC254562.1-201ENST00000417586 456 ntBASIC15.54■□□□□ 0.08
HNF4AP41235 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.54■□□□□ 0.08
HNF4AP41235 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.54■□□□□ 0.08
HNF4AP41235 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.54■□□□□ 0.08
HNF4AP41235 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.54■□□□□ 0.08
HNF4AP41235 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.54■□□□□ 0.08
HNF4AP41235 PRAL-201ENST00000624952 3286 ntBASIC15.54■□□□□ 0.08
HNF4AP41235 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
HNF4AP41235 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HNF4AP41235 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 AL691432.1-201ENST00000596308 1422 ntBASIC15.53■□□□□ 0.08
HNF4AP41235 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.53■□□□□ 0.08
HNF4AP41235 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.53■□□□□ 0.08
HNF4AP41235 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.53■□□□□ 0.08
HNF4AP41235 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.53■□□□□ 0.08
HNF4AP41235 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.53■□□□□ 0.08
HNF4AP41235 RBPMS2P1-201ENST00000437762 623 ntBASIC15.53■□□□□ 0.08
HNF4AP41235 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms