Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
TPM1P09493 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM1P09493 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM1P09493 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.67■□□□□ 0.42
TPM1P09493 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.67■□□□□ 0.42
TPM1P09493 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 AL031432.2-201ENST00000566714 459 ntBASIC17.67■□□□□ 0.42
TPM1P09493 AL928711.1-201ENST00000570165 459 ntBASIC17.67■□□□□ 0.42
TPM1P09493 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 AL356488.2-201ENST00000602755 427 ntBASIC17.67■□□□□ 0.42
TPM1P09493 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
TPM1P09493 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.67■□□□□ 0.42
TPM1P09493 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TPM1P09493 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
TPM1P09493 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.67■□□□□ 0.42
TPM1P09493 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TPM1P09493 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.67■□□□□ 0.42
TPM1P09493 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 C8orf49-201ENST00000525043 1968 ntBASIC17.66■□□□□ 0.42
TPM1P09493 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.66■□□□□ 0.42
TPM1P09493 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.66■□□□□ 0.42
TPM1P09493 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 FAM185BP-201ENST00000443595 716 ntBASIC17.66■□□□□ 0.42
TPM1P09493 AC093724.1-201ENST00000448659 1027 ntBASIC17.66■□□□□ 0.42
TPM1P09493 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TPM1P09493 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.66■□□□□ 0.42
TPM1P09493 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.66■□□□□ 0.42
TPM1P09493 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.66■□□□□ 0.42
TPM1P09493 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.66■□□□□ 0.42
TPM1P09493 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.66■□□□□ 0.42
TPM1P09493 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.66■□□□□ 0.42
TPM1P09493 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TPM1P09493 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TPM1P09493 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.65■□□□□ 0.42
TPM1P09493 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TPM1P09493 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 HMGA1P7-201ENST00000406908 502 ntBASIC17.65■□□□□ 0.42
TPM1P09493 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 HCG4P8-203ENST00000443049 980 ntBASIC17.65■□□□□ 0.42
TPM1P09493 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.65■□□□□ 0.42
TPM1P09493 AC105339.3-201ENST00000560043 636 ntBASIC17.65■□□□□ 0.42
TPM1P09493 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.65■□□□□ 0.42
TPM1P09493 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TPM1P09493 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TPM1P09493 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.65■□□□□ 0.42
TPM1P09493 ACTL9-202ENST00000612068 1252 ntBASIC17.65■□□□□ 0.42
TPM1P09493 AC008735.5-201ENST00000623544 497 ntBASIC17.65■□□□□ 0.42
TPM1P09493 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.65■□□□□ 0.42
TPM1P09493 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TPM1P09493 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms