Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MBD4O95243 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MBD4O95243 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
MBD4O95243 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MBD4O95243 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MBD4O95243 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.97■□□□□ 0.63
MBD4O95243 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.97■□□□□ 0.63
MBD4O95243 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
MBD4O95243 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.97■□□□□ 0.63
MBD4O95243 AL353779.1-201ENST00000434793 351 ntBASIC18.97■□□□□ 0.63
MBD4O95243 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 MEIS3P1-201ENST00000495167 958 ntBASIC18.97■□□□□ 0.63
MBD4O95243 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.97■□□□□ 0.63
MBD4O95243 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.97■□□□□ 0.63
MBD4O95243 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
MBD4O95243 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.97■□□□□ 0.63
MBD4O95243 AC105233.6-201ENST00000642093 218 ntBASIC18.97■□□□□ 0.63
MBD4O95243 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
MBD4O95243 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
MBD4O95243 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
MBD4O95243 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MBD4O95243 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.96■□□□□ 0.63
MBD4O95243 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.96■□□□□ 0.63
MBD4O95243 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.96■□□□□ 0.63
MBD4O95243 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.96■□□□□ 0.63
MBD4O95243 SLED1-202ENST00000512051 380 ntBASIC18.96■□□□□ 0.63
MBD4O95243 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.96■□□□□ 0.63
MBD4O95243 AC055876.2-201ENST00000531834 546 ntBASIC18.96■□□□□ 0.63
MBD4O95243 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.96■□□□□ 0.63
MBD4O95243 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.96■□□□□ 0.63
MBD4O95243 AC140912.1-201ENST00000577171 1054 ntBASIC18.96■□□□□ 0.63
MBD4O95243 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.96■□□□□ 0.63
MBD4O95243 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
MBD4O95243 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.96■□□□□ 0.63
MBD4O95243 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
MBD4O95243 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
MBD4O95243 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
MBD4O95243 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
MBD4O95243 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MBD4O95243 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.96■□□□□ 0.63
MBD4O95243 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
MBD4O95243 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.95■□□□□ 0.62
MBD4O95243 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.95■□□□□ 0.62
MBD4O95243 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
MBD4O95243 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.95■□□□□ 0.62
MBD4O95243 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
MBD4O95243 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
MBD4O95243 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.95■□□□□ 0.62
MBD4O95243 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MBD4O95243 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.95■□□□□ 0.62
MBD4O95243 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.95■□□□□ 0.62
MBD4O95243 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
MBD4O95243 WASH4P-201ENST00000564273 1246 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms