Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
VPS4BO75351 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS4BO75351 AC013268.4-201ENST00000637413 2228 ntBASIC15.72■□□□□ 0.11
VPS4BO75351 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS4BO75351 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VPS4BO75351 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS4BO75351 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS4BO75351 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 AC093724.1-201ENST00000448659 1027 ntBASIC15.72■□□□□ 0.11
VPS4BO75351 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 CXCL1P1-201ENST00000502804 216 ntBASIC15.72■□□□□ 0.11
VPS4BO75351 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS4BO75351 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS4BO75351 OR7E47P-204ENST00000575924 449 ntBASIC15.72■□□□□ 0.11
VPS4BO75351 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS4BO75351 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS4BO75351 AL513477.1-201ENST00000602865 2407 ntBASIC15.72■□□□□ 0.11
VPS4BO75351 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS4BO75351 PPT1-215ENST00000641471 2368 ntBASIC15.71■□□□□ 0.11
VPS4BO75351 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS4BO75351 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS4BO75351 AC015922.1-201ENST00000421102 1152 ntBASIC15.71■□□□□ 0.11
VPS4BO75351 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS4BO75351 AC109322.1-201ENST00000524499 1264 ntBASIC15.71■□□□□ 0.11
VPS4BO75351 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 Z92544.3-201ENST00000624747 417 ntBASIC15.71■□□□□ 0.11
VPS4BO75351 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS4BO75351 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS4BO75351 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VPS4BO75351 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4BO75351 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS4BO75351 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4BO75351 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.71■□□□□ 0.1
VPS4BO75351 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.71■□□□□ 0.1
VPS4BO75351 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.71■□□□□ 0.1
VPS4BO75351 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS4BO75351 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS4BO75351 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS4BO75351 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS4BO75351 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.71■□□□□ 0.1
VPS4BO75351 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4BO75351 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4BO75351 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4BO75351 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms