Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.04■□□□□ -0
LDB3O75112 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
LDB3O75112 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -0
LDB3O75112 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
LDB3O75112 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.03■□□□□ -0
LDB3O75112 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.03■□□□□ -0
LDB3O75112 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.03■□□□□ -0
LDB3O75112 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 KRT8P12-202ENST00000472924 1397 ntBASIC15.03■□□□□ -0
LDB3O75112 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.03■□□□□ -0
LDB3O75112 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.03■□□□□ -0
LDB3O75112 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.03■□□□□ -0
LDB3O75112 SPDYE17-201ENST00000412399 783 ntBASIC15.03■□□□□ -0
LDB3O75112 AL080243.2-201ENST00000418783 582 ntBASIC15.03■□□□□ -0
LDB3O75112 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.03■□□□□ -0
LDB3O75112 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.03■□□□□ -0
LDB3O75112 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 CYMP-203ENST00000474680 1263 ntBASIC15.03■□□□□ -0
LDB3O75112 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
LDB3O75112 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.03■□□□□ -0
LDB3O75112 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.03■□□□□ -0
LDB3O75112 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
LDB3O75112 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.03■□□□□ -0
LDB3O75112 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 AL158211.3-201ENST00000607385 239 ntBASIC15.03■□□□□ -0
LDB3O75112 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.03■□□□□ -0
LDB3O75112 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
LDB3O75112 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.03■□□□□ -0
LDB3O75112 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.02■□□□□ -0
LDB3O75112 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
LDB3O75112 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
LDB3O75112 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.02■□□□□ -0
LDB3O75112 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
LDB3O75112 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
LDB3O75112 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 AZGP1P1-201ENST00000411909 902 ntBASIC15.02■□□□□ -0
LDB3O75112 HLA-V-204ENST00000476601 1289 ntBASIC15.02■□□□□ -0
LDB3O75112 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.02■□□□□ -0
LDB3O75112 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.02■□□□□ -0
LDB3O75112 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.02■□□□□ -0
LDB3O75112 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.02■□□□□ -0
LDB3O75112 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.02■□□□□ -0
LDB3O75112 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.02■□□□□ -0
LDB3O75112 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.02■□□□□ -0
LDB3O75112 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.02■□□□□ -0
LDB3O75112 TEX28P1-201ENST00000613479 1221 ntBASIC15.02■□□□□ -0
LDB3O75112 TEX28P2-201ENST00000617764 1221 ntBASIC15.02■□□□□ -0
LDB3O75112 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.02□□□□□ -0.01
LDB3O75112 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LDB3O75112 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LDB3O75112 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
LDB3O75112 AC022188.1-201ENST00000620960 1664 ntBASIC15.02□□□□□ -0.01
LDB3O75112 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.02□□□□□ -0.01
LDB3O75112 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
LDB3O75112 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LDB3O75112 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LDB3O75112 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LDB3O75112 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LDB3O75112 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.02□□□□□ -0.01
LDB3O75112 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.02□□□□□ -0.01
LDB3O75112 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LDB3O75112 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.01□□□□□ -0.01
LDB3O75112 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 AC055876.3-201ENST00000431496 288 ntBASIC15.01□□□□□ -0.01
LDB3O75112 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms