Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 AL627223.1-201ENST00000416693 442 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.09□□□□□ -0.15
LMX1BO60663 SPDYE11-202ENST00000450699 704 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.09□□□□□ -0.15
LMX1BO60663 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.09□□□□□ -0.15
LMX1BO60663 AC093214.1-201ENST00000511688 1107 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.09□□□□□ -0.15
LMX1BO60663 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.09□□□□□ -0.15
LMX1BO60663 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 SPDYE9P-201ENST00000570642 692 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
LMX1BO60663 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.09□□□□□ -0.15
LMX1BO60663 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.09□□□□□ -0.15
LMX1BO60663 SPDYE10P-202ENST00000612005 668 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 SPDYE8P-202ENST00000612377 668 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 AC009093.7-201ENST00000623853 1223 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
LMX1BO60663 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 AC022532.1-201ENST00000624563 1728 ntBASIC14.09□□□□□ -0.15
LMX1BO60663 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
LMX1BO60663 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LMX1BO60663 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LMX1BO60663 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.08□□□□□ -0.15
LMX1BO60663 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
LMX1BO60663 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LMX1BO60663 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.08□□□□□ -0.15
LMX1BO60663 SSR4P1-203ENST00000599569 2260 ntBASIC14.08□□□□□ -0.15
LMX1BO60663 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
LMX1BO60663 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LMX1BO60663 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
LMX1BO60663 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LMX1BO60663 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.08□□□□□ -0.16
LMX1BO60663 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 HAUS4P1-201ENST00000406739 1145 ntBASIC14.08□□□□□ -0.16
LMX1BO60663 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.08□□□□□ -0.16
LMX1BO60663 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.08□□□□□ -0.16
LMX1BO60663 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.08□□□□□ -0.16
LMX1BO60663 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 INGX-202ENST00000489074 768 ntBASIC14.08□□□□□ -0.16
LMX1BO60663 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.08□□□□□ -0.16
LMX1BO60663 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.08□□□□□ -0.16
LMX1BO60663 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.08□□□□□ -0.16
LMX1BO60663 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.08□□□□□ -0.16
LMX1BO60663 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.08□□□□□ -0.16
LMX1BO60663 AC093520.2-201ENST00000561830 333 ntBASIC14.08□□□□□ -0.16
LMX1BO60663 AC015911.4-201ENST00000588022 1070 ntBASIC14.08□□□□□ -0.16
LMX1BO60663 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.08□□□□□ -0.16
LMX1BO60663 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
LMX1BO60663 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LMX1BO60663 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.08□□□□□ -0.16
LMX1BO60663 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LMX1BO60663 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms