Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 AP001002.3-201ENST00000623482 206 ntBASIC26.68■■□□□ 1.86
CUX2O14529 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC26.68■■□□□ 1.86
CUX2O14529 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC26.68■■□□□ 1.86
CUX2O14529 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC26.68■■□□□ 1.86
CUX2O14529 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
CUX2O14529 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 AC007613.1-201ENST00000572811 2597 ntBASIC26.68■■□□□ 1.86
CUX2O14529 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC26.68■■□□□ 1.86
CUX2O14529 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC26.68■■□□□ 1.86
CUX2O14529 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
CUX2O14529 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 AL121723.1-201ENST00000445194 1519 ntBASIC26.67■■□□□ 1.86
CUX2O14529 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC26.67■■□□□ 1.86
CUX2O14529 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC26.67■■□□□ 1.86
CUX2O14529 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC26.67■■□□□ 1.86
CUX2O14529 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC26.67■■□□□ 1.86
CUX2O14529 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC26.67■■□□□ 1.86
CUX2O14529 MVK-214ENST00000629016 1591 ntTSL 5 BASIC26.67■■□□□ 1.86
CUX2O14529 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
CUX2O14529 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
CUX2O14529 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
CUX2O14529 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
CUX2O14529 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX2O14529 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC26.67■■□□□ 1.86
CUX2O14529 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC26.67■■□□□ 1.86
CUX2O14529 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC26.67■■□□□ 1.86
CUX2O14529 EID1-202ENST00000560490 584 ntTSL 3 BASIC26.67■■□□□ 1.86
CUX2O14529 RPL17P45-201ENST00000586289 509 ntBASIC26.67■■□□□ 1.86
CUX2O14529 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
CUX2O14529 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX2O14529 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CUX2O14529 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC26.66■■□□□ 1.86
CUX2O14529 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX2O14529 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CUX2O14529 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CUX2O14529 TBC1D3J-201ENST00000620719 1426 ntBASIC26.66■■□□□ 1.86
CUX2O14529 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
CUX2O14529 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC26.66■■□□□ 1.86
CUX2O14529 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC26.66■■□□□ 1.86
CUX2O14529 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CUX2O14529 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC26.66■■□□□ 1.86
CUX2O14529 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC26.66■■□□□ 1.86
CUX2O14529 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX2O14529 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
CUX2O14529 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC26.65■■□□□ 1.86
CUX2O14529 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX2O14529 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
CUX2O14529 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC26.65■■□□□ 1.86
CUX2O14529 HPGD-203ENST00000422112 805 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX2O14529 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX2O14529 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX2O14529 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC26.65■■□□□ 1.86
CUX2O14529 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC26.65■■□□□ 1.86
CUX2O14529 ZACNP1-201ENST00000612259 710 ntBASIC26.65■■□□□ 1.86
CUX2O14529 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC26.65■■□□□ 1.86
CUX2O14529 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 EML3-217ENST00000531557 2509 ntTSL 5 BASIC26.65■■□□□ 1.86
CUX2O14529 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX2O14529 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
CUX2O14529 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CUX2O14529 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX2O14529 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CUX2O14529 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CUX2O14529 MRPL37P1-201ENST00000592451 1337 ntBASIC26.64■■□□□ 1.86
CUX2O14529 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC26.64■■□□□ 1.86
CUX2O14529 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC26.64■■□□□ 1.86
CUX2O14529 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX2O14529 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC26.64■■□□□ 1.86
CUX2O14529 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX2O14529 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC26.64■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms