Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
USP42Q9H9J4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP42Q9H9J4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP42Q9H9J4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP42Q9H9J4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.19■■■□□ 2.42
USP42Q9H9J4 RASSF1-AS1-201ENST00000629828 790 ntBASIC30.18■■■□□ 2.42
USP42Q9H9J4 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
USP42Q9H9J4 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
USP42Q9H9J4 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
USP42Q9H9J4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
USP42Q9H9J4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
USP42Q9H9J4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC30.17■■■□□ 2.42
USP42Q9H9J4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC30.17■■■□□ 2.42
USP42Q9H9J4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
USP42Q9H9J4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USP42Q9H9J4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.16■■■□□ 2.42
USP42Q9H9J4 AK3-203ENST00000447596 705 ntTSL 2 BASIC30.16■■■□□ 2.42
USP42Q9H9J4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC30.16■■■□□ 2.42
USP42Q9H9J4 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
USP42Q9H9J4 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
USP42Q9H9J4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
USP42Q9H9J4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
USP42Q9H9J4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC30.15■■■□□ 2.42
USP42Q9H9J4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC30.15■■■□□ 2.42
USP42Q9H9J4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC30.15■■■□□ 2.42
USP42Q9H9J4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC30.15■■■□□ 2.42
USP42Q9H9J4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC30.15■■■□□ 2.42
USP42Q9H9J4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
USP42Q9H9J4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.42
USP42Q9H9J4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
USP42Q9H9J4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
USP42Q9H9J4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.41
USP42Q9H9J4 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.13■■■□□ 2.41
USP42Q9H9J4 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
USP42Q9H9J4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
USP42Q9H9J4 AF131216.4-201ENST00000638924 1588 ntBASIC30.13■■■□□ 2.41
USP42Q9H9J4 CD72-202ENST00000378430 585 ntTSL 3 BASIC30.13■■■□□ 2.41
USP42Q9H9J4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.13■■■□□ 2.41
USP42Q9H9J4 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
USP42Q9H9J4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC30.12■■■□□ 2.41
USP42Q9H9J4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC30.12■■■□□ 2.41
USP42Q9H9J4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
USP42Q9H9J4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC30.11■■■□□ 2.41
USP42Q9H9J4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC30.11■■■□□ 2.41
USP42Q9H9J4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
USP42Q9H9J4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
USP42Q9H9J4 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
USP42Q9H9J4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC30.1■■■□□ 2.41
USP42Q9H9J4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
USP42Q9H9J4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USP42Q9H9J4 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC30.09■■■□□ 2.41
USP42Q9H9J4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC30.09■■■□□ 2.41
USP42Q9H9J4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USP42Q9H9J4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.09■■■□□ 2.41
USP42Q9H9J4 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
USP42Q9H9J4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.08■■■□□ 2.41
USP42Q9H9J4 SNAI3-AS1-204ENST00000567997 2048 ntBASIC30.08■■■□□ 2.41
USP42Q9H9J4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC30.07■■■□□ 2.4
USP42Q9H9J4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.07■■■□□ 2.4
USP42Q9H9J4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
USP42Q9H9J4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
USP42Q9H9J4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
USP42Q9H9J4 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
USP42Q9H9J4 ZNRF2P3-201ENST00000424200 374 ntBASIC30.06■■■□□ 2.4
USP42Q9H9J4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
USP42Q9H9J4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
USP42Q9H9J4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
USP42Q9H9J4 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
USP42Q9H9J4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
USP42Q9H9J4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
USP42Q9H9J4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC30.04■■■□□ 2.4
USP42Q9H9J4 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.04■■■□□ 2.4
USP42Q9H9J4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
USP42Q9H9J4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30.04■■■□□ 2.4
USP42Q9H9J4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
USP42Q9H9J4 AC106739.1-201ENST00000617035 715 ntBASIC30.04■■■□□ 2.4
USP42Q9H9J4 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC30.04■■■□□ 2.4
USP42Q9H9J4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP42Q9H9J4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC30.03■■■□□ 2.4
USP42Q9H9J4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
USP42Q9H9J4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.03■■■□□ 2.4
USP42Q9H9J4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.03■■■□□ 2.4
USP42Q9H9J4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
USP42Q9H9J4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
USP42Q9H9J4 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
USP42Q9H9J4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
USP42Q9H9J4 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC30.02■■■□□ 2.4
USP42Q9H9J4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
USP42Q9H9J4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC30.02■■■□□ 2.4
USP42Q9H9J4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC30.02■■■□□ 2.4
USP42Q9H9J4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC30.02■■■□□ 2.4
USP42Q9H9J4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
USP42Q9H9J4 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
USP42Q9H9J4 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
USP42Q9H9J4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
USP42Q9H9J4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC30.01■■■□□ 2.4
USP42Q9H9J4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
USP42Q9H9J4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
USP42Q9H9J4 RARRES2P6-201ENST00000567333 442 ntBASIC30.01■■■□□ 2.4
USP42Q9H9J4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.01■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms