Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.07■■□□□ 1.44
SHROOM3Q8TF72 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.06■■□□□ 1.44
SHROOM3Q8TF72 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
SHROOM3Q8TF72 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.06■■□□□ 1.44
SHROOM3Q8TF72 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.06■■□□□ 1.44
SHROOM3Q8TF72 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SHROOM3Q8TF72 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
SHROOM3Q8TF72 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SHROOM3Q8TF72 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.05■■□□□ 1.44
SHROOM3Q8TF72 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
SHROOM3Q8TF72 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
SHROOM3Q8TF72 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
SHROOM3Q8TF72 AC018755.3-202ENST00000596210 929 ntBASIC24.05■■□□□ 1.44
SHROOM3Q8TF72 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
SHROOM3Q8TF72 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.05■■□□□ 1.44
SHROOM3Q8TF72 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SHROOM3Q8TF72 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SHROOM3Q8TF72 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SHROOM3Q8TF72 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC24.04■■□□□ 1.44
SHROOM3Q8TF72 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
SHROOM3Q8TF72 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 AC142381.3-201ENST00000568208 1670 ntBASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
SHROOM3Q8TF72 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SHROOM3Q8TF72 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SHROOM3Q8TF72 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SHROOM3Q8TF72 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.02■■□□□ 1.44
SHROOM3Q8TF72 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SHROOM3Q8TF72 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SHROOM3Q8TF72 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SHROOM3Q8TF72 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.43
SHROOM3Q8TF72 MIR4508-201ENST00000584178 70 ntBASIC24.02■■□□□ 1.43
SHROOM3Q8TF72 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC24.02■■□□□ 1.43
SHROOM3Q8TF72 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SHROOM3Q8TF72 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SHROOM3Q8TF72 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SHROOM3Q8TF72 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.01■■□□□ 1.43
SHROOM3Q8TF72 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.01■■□□□ 1.43
SHROOM3Q8TF72 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
SHROOM3Q8TF72 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SHROOM3Q8TF72 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24■■□□□ 1.43
SHROOM3Q8TF72 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
SHROOM3Q8TF72 AC103724.3-201ENST00000564481 992 ntBASIC24■■□□□ 1.43
SHROOM3Q8TF72 MIR6089-201ENST00000616698 64 ntBASIC24■■□□□ 1.43
SHROOM3Q8TF72 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHROOM3Q8TF72 AC022616.5-201ENST00000518796 181 ntBASIC23.99■■□□□ 1.43
SHROOM3Q8TF72 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SHROOM3Q8TF72 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHROOM3Q8TF72 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.99■■□□□ 1.43
SHROOM3Q8TF72 AP003733.4-201ENST00000623785 1697 ntBASIC23.99■■□□□ 1.43
SHROOM3Q8TF72 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.98■■□□□ 1.43
SHROOM3Q8TF72 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHROOM3Q8TF72 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHROOM3Q8TF72 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.98■■□□□ 1.43
SHROOM3Q8TF72 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHROOM3Q8TF72 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHROOM3Q8TF72 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SHROOM3Q8TF72 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.97■■□□□ 1.43
SHROOM3Q8TF72 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.97■■□□□ 1.43
SHROOM3Q8TF72 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SHROOM3Q8TF72 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SHROOM3Q8TF72 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SHROOM3Q8TF72 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SHROOM3Q8TF72 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SHROOM3Q8TF72 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SHROOM3Q8TF72 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SHROOM3Q8TF72 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.96■■□□□ 1.43
SHROOM3Q8TF72 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
SHROOM3Q8TF72 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.95■■□□□ 1.42
SHROOM3Q8TF72 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 MIR935-201ENST00000401179 91 ntBASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 AC010980.1-201ENST00000587192 1142 ntBASIC23.94■■□□□ 1.42
SHROOM3Q8TF72 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SHROOM3Q8TF72 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.93■■□□□ 1.42
SHROOM3Q8TF72 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 BHLHE23-202ENST00000612929 1109 ntBASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.92■■□□□ 1.42
SHROOM3Q8TF72 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms