Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28AQ8IWP9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CCDC28AQ8IWP9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC28AQ8IWP9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28AQ8IWP9 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC28AQ8IWP9 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CCDC28AQ8IWP9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC28AQ8IWP9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CCDC28AQ8IWP9 AC127496.7-201ENST00000625110 1798 ntBASIC19.49■□□□□ 0.71
CCDC28AQ8IWP9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC28AQ8IWP9 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28AQ8IWP9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28AQ8IWP9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28AQ8IWP9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC28AQ8IWP9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC28AQ8IWP9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 AC073130.3-201ENST00000624389 2278 ntBASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC28AQ8IWP9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 AL391422.3-201ENST00000603791 2761 ntBASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC28AQ8IWP9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28AQ8IWP9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC28AQ8IWP9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28AQ8IWP9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC28AQ8IWP9 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28AQ8IWP9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28AQ8IWP9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28AQ8IWP9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 FOXO3B-201ENST00000395675 1928 ntBASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 AC127502.1-201ENST00000399971 1502 ntBASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28AQ8IWP9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28AQ8IWP9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28AQ8IWP9 AF106564.1-201ENST00000607058 2553 ntBASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28AQ8IWP9 AP002414.2-202ENST00000590929 1450 ntBASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC28AQ8IWP9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28AQ8IWP9 LINC00526-201ENST00000581067 1875 ntBASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms