Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDH11P55287 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.35■■□□□ 1.01
CDH11P55287 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH11P55287 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.34■■□□□ 1.01
CDH11P55287 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH11P55287 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CDH11P55287 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.34■■□□□ 1.01
CDH11P55287 TSPY13P-201ENST00000338964 914 ntBASIC21.34■■□□□ 1.01
CDH11P55287 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH11P55287 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.34■■□□□ 1.01
CDH11P55287 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH11P55287 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH11P55287 LINC00543-201ENST00000567234 1845 ntBASIC21.34■■□□□ 1.01
CDH11P55287 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH11P55287 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH11P55287 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH11P55287 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDH11P55287 AC009831.1-201ENST00000580420 1582 ntBASIC21.33■■□□□ 1.01
CDH11P55287 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CDH11P55287 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CDH11P55287 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH11P55287 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.33■■□□□ 1.01
CDH11P55287 AC025884.2-201ENST00000553429 711 ntBASIC21.33■■□□□ 1.01
CDH11P55287 AC133552.2-201ENST00000619106 1032 ntBASIC21.33■■□□□ 1.01
CDH11P55287 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CDH11P55287 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CDH11P55287 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDH11P55287 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.32■■□□□ 1
CDH11P55287 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDH11P55287 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.32■■□□□ 1
CDH11P55287 AC004987.1-201ENST00000428627 508 ntBASIC21.32■■□□□ 1
CDH11P55287 ATP5G2P3-201ENST00000429083 425 ntBASIC21.32■■□□□ 1
CDH11P55287 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CDH11P55287 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.32■■□□□ 1
CDH11P55287 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDH11P55287 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDH11P55287 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDH11P55287 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.31■■□□□ 1
CDH11P55287 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDH11P55287 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CDH11P55287 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.31■■□□□ 1
CDH11P55287 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.31■■□□□ 1
CDH11P55287 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDH11P55287 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CDH11P55287 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.31■■□□□ 1
CDH11P55287 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDH11P55287 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
CDH11P55287 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 RP9P-202ENST00000450133 1212 ntBASIC21.3■■□□□ 1
CDH11P55287 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.3■■□□□ 1
CDH11P55287 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CDH11P55287 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDH11P55287 AL592293.1-201ENST00000502889 1188 ntBASIC21.29■■□□□ 1
CDH11P55287 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.29■■□□□ 1
CDH11P55287 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.29■■□□□ 1
CDH11P55287 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CDH11P55287 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CDH11P55287 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CDH11P55287 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.29■■□□□ 1
CDH11P55287 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CDH11P55287 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDH11P55287 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDH11P55287 AC141586.4-201ENST00000624558 1573 ntBASIC21.28■■□□□ 1
CDH11P55287 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.28■■□□□ 1
CDH11P55287 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.28■■□□□ 1
CDH11P55287 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDH11P55287 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CDH11P55287 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDH11P55287 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CDH11P55287 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.28■■□□□ 1
CDH11P55287 AC133561.1-201ENST00000568600 2415 ntBASIC21.28■■□□□ 1
CDH11P55287 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDH11P55287 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CDH11P55287 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDH11P55287 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CDH11P55287 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH11P55287 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.27■■□□□ 1
CDH11P55287 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CDH11P55287 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDH11P55287 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.27■■□□□ 1
CDH11P55287 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH11P55287 AC093536.1-201ENST00000569153 554 ntBASIC21.27■■□□□ 1
CDH11P55287 MIR3960-201ENST00000583311 91 ntBASIC21.27■■□□□ 1
CDH11P55287 AC026202.3-201ENST00000600805 1127 ntBASIC21.27■■□□□ 1
CDH11P55287 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.27■■□□□ 1
CDH11P55287 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH11P55287 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH11P55287 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CDH11P55287 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.27■■□□□ 1
CDH11P55287 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.27■□□□□ 0.99
CDH11P55287 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.27■□□□□ 0.99
CDH11P55287 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CDH11P55287 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH11P55287 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms