Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX2P48431 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX2P48431 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.55■□□□□ 0.88
SOX2P48431 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX2P48431 AL157400.5-201ENST00000507624 621 ntBASIC20.55■□□□□ 0.88
SOX2P48431 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.55■□□□□ 0.88
SOX2P48431 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX2P48431 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX2P48431 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX2P48431 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.55■□□□□ 0.88
SOX2P48431 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX2P48431 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SOX2P48431 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SOX2P48431 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SOX2P48431 AC016575.1-201ENST00000607026 382 ntBASIC20.54■□□□□ 0.88
SOX2P48431 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.54■□□□□ 0.88
SOX2P48431 AC004812.2-201ENST00000611079 2094 ntBASIC20.54■□□□□ 0.88
SOX2P48431 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SOX2P48431 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.53■□□□□ 0.88
SOX2P48431 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX2P48431 ABHD17AP4-201ENST00000411545 909 ntBASIC20.53■□□□□ 0.88
SOX2P48431 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.53■□□□□ 0.88
SOX2P48431 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.53■□□□□ 0.88
SOX2P48431 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.53■□□□□ 0.88
SOX2P48431 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.53■□□□□ 0.88
SOX2P48431 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SOX2P48431 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.53■□□□□ 0.88
SOX2P48431 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX2P48431 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX2P48431 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SOX2P48431 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX2P48431 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX2P48431 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
SOX2P48431 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SOX2P48431 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.52■□□□□ 0.88
SOX2P48431 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.52■□□□□ 0.88
SOX2P48431 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
SOX2P48431 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SOX2P48431 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX2P48431 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX2P48431 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SOX2P48431 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX2P48431 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.51■□□□□ 0.87
SOX2P48431 AC025884.2-201ENST00000553429 711 ntBASIC20.51■□□□□ 0.87
SOX2P48431 MIR3960-201ENST00000583311 91 ntBASIC20.51■□□□□ 0.87
SOX2P48431 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.51■□□□□ 0.87
SOX2P48431 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.51■□□□□ 0.87
SOX2P48431 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX2P48431 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SOX2P48431 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SOX2P48431 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX2P48431 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX2P48431 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SOX2P48431 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX2P48431 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.5■□□□□ 0.87
SOX2P48431 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.5■□□□□ 0.87
SOX2P48431 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX2P48431 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SOX2P48431 ABCB10P4-201ENST00000566803 2184 ntBASIC20.5■□□□□ 0.87
SOX2P48431 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
SOX2P48431 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX2P48431 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX2P48431 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SOX2P48431 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.49■□□□□ 0.87
SOX2P48431 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SOX2P48431 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
SOX2P48431 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SOX2P48431 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX2P48431 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX2P48431 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX2P48431 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX2P48431 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.49■□□□□ 0.87
SOX2P48431 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX2P48431 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.49■□□□□ 0.87
SOX2P48431 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.48■□□□□ 0.87
SOX2P48431 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX2P48431 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SOX2P48431 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.48■□□□□ 0.87
SOX2P48431 AC068473.5-201ENST00000616428 2072 ntBASIC20.48■□□□□ 0.87
SOX2P48431 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.48■□□□□ 0.87
SOX2P48431 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX2P48431 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.48■□□□□ 0.87
SOX2P48431 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX2P48431 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.48■□□□□ 0.87
SOX2P48431 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SOX2P48431 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SOX2P48431 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SOX2P48431 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SOX2P48431 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SOX2P48431 AC060814.1-201ENST00000554326 538 ntBASIC20.47■□□□□ 0.87
SOX2P48431 SMPD5-203ENST00000639008 1464 ntBASIC20.47■□□□□ 0.87
SOX2P48431 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SOX2P48431 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SOX2P48431 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SOX2P48431 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SOX2P48431 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SOX2P48431 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SOX2P48431 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SOX2P48431 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.46■□□□□ 0.87
SOX2P48431 MIR6089-201ENST00000616698 64 ntBASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms