Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC137630.3-201ENST00000607245 391 ntBASIC25.22■■□□□ 1.63
SCN1AP35498 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.22■■□□□ 1.63
SCN1AP35498 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SCN1AP35498 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.22■■□□□ 1.63
SCN1AP35498 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
SCN1AP35498 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SCN1AP35498 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SCN1AP35498 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.21■■□□□ 1.63
SCN1AP35498 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SCN1AP35498 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.21■■□□□ 1.63
SCN1AP35498 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
SCN1AP35498 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
SCN1AP35498 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
SCN1AP35498 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SCN1AP35498 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SCN1AP35498 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SCN1AP35498 AC239859.2-201ENST00000444165 318 ntBASIC25.19■■□□□ 1.62
SCN1AP35498 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25.19■■□□□ 1.62
SCN1AP35498 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
SCN1AP35498 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SCN1AP35498 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SCN1AP35498 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.19■■□□□ 1.62
SCN1AP35498 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SCN1AP35498 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.19■■□□□ 1.62
SCN1AP35498 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SCN1AP35498 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.19■■□□□ 1.62
SCN1AP35498 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SCN1AP35498 AF131216.4-201ENST00000638924 1588 ntBASIC25.18■■□□□ 1.62
SCN1AP35498 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.18■■□□□ 1.62
SCN1AP35498 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.18■■□□□ 1.62
SCN1AP35498 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.18■■□□□ 1.62
SCN1AP35498 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SCN1AP35498 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SCN1AP35498 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SCN1AP35498 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SCN1AP35498 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC25.17■■□□□ 1.62
SCN1AP35498 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.17■■□□□ 1.62
SCN1AP35498 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SCN1AP35498 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
SCN1AP35498 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SCN1AP35498 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SCN1AP35498 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.17■■□□□ 1.62
SCN1AP35498 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SCN1AP35498 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SCN1AP35498 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SCN1AP35498 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.16■■□□□ 1.62
SCN1AP35498 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.16■■□□□ 1.62
SCN1AP35498 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SCN1AP35498 MIR4787-201ENST00000607364 84 ntBASIC25.15■■□□□ 1.62
SCN1AP35498 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.15■■□□□ 1.62
SCN1AP35498 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.15■■□□□ 1.62
SCN1AP35498 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
SCN1AP35498 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SCN1AP35498 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.15■■□□□ 1.62
SCN1AP35498 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SCN1AP35498 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SCN1AP35498 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.14■■□□□ 1.62
SCN1AP35498 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.14■■□□□ 1.62
SCN1AP35498 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC25.14■■□□□ 1.61
SCN1AP35498 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.14■■□□□ 1.61
SCN1AP35498 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.13■■□□□ 1.61
SCN1AP35498 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.13■■□□□ 1.61
SCN1AP35498 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SCN1AP35498 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SCN1AP35498 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
SCN1AP35498 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SCN1AP35498 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.13■■□□□ 1.61
SCN1AP35498 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SCN1AP35498 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.13■■□□□ 1.61
SCN1AP35498 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.13■■□□□ 1.61
SCN1AP35498 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.12■■□□□ 1.61
SCN1AP35498 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SCN1AP35498 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
SCN1AP35498 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC25.12■■□□□ 1.61
SCN1AP35498 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SCN1AP35498 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SCN1AP35498 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SCN1AP35498 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SCN1AP35498 AC090877.2-201ENST00000558441 1738 ntBASIC25.12■■□□□ 1.61
SCN1AP35498 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SCN1AP35498 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.12■■□□□ 1.61
SCN1AP35498 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SCN1AP35498 AC021242.3-201ENST00000607598 1377 ntBASIC25.11■■□□□ 1.61
SCN1AP35498 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SCN1AP35498 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.11■■□□□ 1.61
SCN1AP35498 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
SCN1AP35498 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SCN1AP35498 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SCN1AP35498 KRT125P-201ENST00000546827 989 ntBASIC25.1■■□□□ 1.61
SCN1AP35498 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
SCN1AP35498 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
SCN1AP35498 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC25.1■■□□□ 1.61
SCN1AP35498 CREM-229ENST00000474362 1030 ntTSL 2 BASIC25.1■■□□□ 1.61
SCN1AP35498 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
SCN1AP35498 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
SCN1AP35498 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC25.1■■□□□ 1.61
SCN1AP35498 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SCN1AP35498 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SCN1AP35498 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SCN1AP35498 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms