Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.84■□□□□ 0.77
USF1P22415 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF1P22415 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF1P22415 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USF1P22415 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USF1P22415 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
USF1P22415 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.83■□□□□ 0.77
USF1P22415 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USF1P22415 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USF1P22415 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
USF1P22415 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
USF1P22415 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.82■□□□□ 0.76
USF1P22415 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USF1P22415 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USF1P22415 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USF1P22415 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.81■□□□□ 0.76
USF1P22415 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.81■□□□□ 0.76
USF1P22415 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USF1P22415 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USF1P22415 AC091060.1-201ENST00000623524 1766 ntBASIC19.8■□□□□ 0.76
USF1P22415 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.8■□□□□ 0.76
USF1P22415 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.8■□□□□ 0.76
USF1P22415 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.79■□□□□ 0.76
USF1P22415 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USF1P22415 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USF1P22415 AC011551.1-201ENST00000614101 683 ntBASIC19.79■□□□□ 0.76
USF1P22415 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.79■□□□□ 0.76
USF1P22415 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
USF1P22415 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USF1P22415 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USF1P22415 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.78■□□□□ 0.76
USF1P22415 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.78■□□□□ 0.76
USF1P22415 AC010997.5-201ENST00000609182 354 ntBASIC19.78■□□□□ 0.76
USF1P22415 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
USF1P22415 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USF1P22415 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
USF1P22415 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.78■□□□□ 0.76
USF1P22415 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
USF1P22415 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USF1P22415 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USF1P22415 AC145676.1-201ENST00000514988 2004 ntBASIC19.77■□□□□ 0.76
USF1P22415 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.77■□□□□ 0.76
USF1P22415 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.77■□□□□ 0.76
USF1P22415 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.77■□□□□ 0.76
USF1P22415 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.77■□□□□ 0.76
USF1P22415 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USF1P22415 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USF1P22415 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USF1P22415 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.77■□□□□ 0.76
USF1P22415 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.77■□□□□ 0.75
USF1P22415 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.76■□□□□ 0.75
USF1P22415 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.76■□□□□ 0.75
USF1P22415 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.76■□□□□ 0.75
USF1P22415 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.76■□□□□ 0.75
USF1P22415 MTDHP2-201ENST00000601468 714 ntBASIC19.76■□□□□ 0.75
USF1P22415 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.76■□□□□ 0.75
USF1P22415 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USF1P22415 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USF1P22415 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USF1P22415 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USF1P22415 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.75■□□□□ 0.75
USF1P22415 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
USF1P22415 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.75■□□□□ 0.75
USF1P22415 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
USF1P22415 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.74■□□□□ 0.75
USF1P22415 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USF1P22415 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USF1P22415 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USF1P22415 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.74■□□□□ 0.75
USF1P22415 MIR935-201ENST00000401179 91 ntBASIC19.74■□□□□ 0.75
USF1P22415 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.74■□□□□ 0.75
USF1P22415 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USF1P22415 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USF1P22415 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF1P22415 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF1P22415 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF1P22415 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
USF1P22415 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.73■□□□□ 0.75
USF1P22415 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USF1P22415 MIR6724-1-201ENST00000616420 92 ntBASIC19.73■□□□□ 0.75
USF1P22415 MIR6724-2-201ENST00000616483 92 ntBASIC19.73■□□□□ 0.75
USF1P22415 MIR6724-4-201ENST00000617390 92 ntBASIC19.73■□□□□ 0.75
USF1P22415 MIR6724-3-201ENST00000622482 92 ntBASIC19.73■□□□□ 0.75
USF1P22415 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.73■□□□□ 0.75
USF1P22415 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF1P22415 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USF1P22415 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.73■□□□□ 0.75
USF1P22415 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
USF1P22415 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USF1P22415 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.72■□□□□ 0.75
USF1P22415 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
USF1P22415 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.72■□□□□ 0.75
USF1P22415 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms