Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
COL3A1P02461 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC31.42■■■□□ 2.62
COL3A1P02461 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
COL3A1P02461 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC31.42■■■□□ 2.62
COL3A1P02461 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL3A1P02461 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
COL3A1P02461 AC021242.3-201ENST00000607598 1377 ntBASIC31.41■■■□□ 2.62
COL3A1P02461 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
COL3A1P02461 CEBPA-AS1-201ENST00000592982 2198 ntBASIC31.41■■■□□ 2.62
COL3A1P02461 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
COL3A1P02461 AC090877.2-201ENST00000558441 1738 ntBASIC31.41■■■□□ 2.62
COL3A1P02461 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL3A1P02461 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL3A1P02461 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL3A1P02461 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC31.4■■■□□ 2.62
COL3A1P02461 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
COL3A1P02461 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
COL3A1P02461 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL3A1P02461 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL3A1P02461 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC31.39■■■□□ 2.62
COL3A1P02461 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL3A1P02461 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
COL3A1P02461 CREM-229ENST00000474362 1030 ntTSL 2 BASIC31.39■■■□□ 2.62
COL3A1P02461 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC31.39■■■□□ 2.62
COL3A1P02461 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL3A1P02461 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL3A1P02461 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL3A1P02461 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL3A1P02461 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC31.38■■■□□ 2.61
COL3A1P02461 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
COL3A1P02461 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.37■■■□□ 2.61
COL3A1P02461 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL3A1P02461 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL3A1P02461 BX664725.1-201ENST00000438252 379 ntBASIC31.37■■■□□ 2.61
COL3A1P02461 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC31.37■■■□□ 2.61
COL3A1P02461 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL3A1P02461 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL3A1P02461 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC31.37■■■□□ 2.61
COL3A1P02461 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL3A1P02461 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC31.37■■■□□ 2.61
COL3A1P02461 AC239859.2-201ENST00000444165 318 ntBASIC31.36■■■□□ 2.61
COL3A1P02461 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL3A1P02461 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
COL3A1P02461 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
COL3A1P02461 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.35■■■□□ 2.61
COL3A1P02461 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC31.34■■■□□ 2.61
COL3A1P02461 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC31.34■■■□□ 2.61
COL3A1P02461 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL3A1P02461 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
COL3A1P02461 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
COL3A1P02461 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.34■■■□□ 2.61
COL3A1P02461 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
COL3A1P02461 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.33■■■□□ 2.61
COL3A1P02461 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL3A1P02461 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.33■■■□□ 2.61
COL3A1P02461 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC31.33■■■□□ 2.61
COL3A1P02461 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC31.32■■■□□ 2.6
COL3A1P02461 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL3A1P02461 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
COL3A1P02461 UNC93B8-201ENST00000511903 705 ntBASIC31.31■■■□□ 2.6
COL3A1P02461 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.31■■■□□ 2.6
COL3A1P02461 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC31.31■■■□□ 2.6
COL3A1P02461 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
COL3A1P02461 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL3A1P02461 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
COL3A1P02461 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.3■■■□□ 2.6
COL3A1P02461 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL3A1P02461 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC31.3■■■□□ 2.6
COL3A1P02461 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC31.3■■■□□ 2.6
COL3A1P02461 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC31.3■■■□□ 2.6
COL3A1P02461 MIR4787-201ENST00000607364 84 ntBASIC31.3■■■□□ 2.6
COL3A1P02461 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
COL3A1P02461 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
COL3A1P02461 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL3A1P02461 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
COL3A1P02461 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL3A1P02461 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
COL3A1P02461 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL3A1P02461 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL3A1P02461 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL3A1P02461 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC31.28■■■□□ 2.6
COL3A1P02461 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC31.28■■■□□ 2.6
COL3A1P02461 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL3A1P02461 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
COL3A1P02461 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL3A1P02461 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL3A1P02461 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
COL3A1P02461 SHF-207ENST00000560540 2062 ntTSL 5 BASIC31.27■■■□□ 2.6
COL3A1P02461 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
COL3A1P02461 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL3A1P02461 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
COL3A1P02461 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.26■■■□□ 2.6
COL3A1P02461 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC31.26■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms