Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH4O15457 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH4O15457 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH4O15457 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MSH4O15457 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH4O15457 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.53■■□□□ 1.84
MSH4O15457 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
MSH4O15457 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.53■■□□□ 1.84
MSH4O15457 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MSH4O15457 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH4O15457 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH4O15457 AC090877.2-201ENST00000558441 1738 ntBASIC26.52■■□□□ 1.84
MSH4O15457 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.52■■□□□ 1.84
MSH4O15457 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MSH4O15457 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
MSH4O15457 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
MSH4O15457 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
MSH4O15457 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH4O15457 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH4O15457 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
MSH4O15457 MIR4281-201ENST00000580852 62 ntBASIC26.51■■□□□ 1.83
MSH4O15457 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.51■■□□□ 1.83
MSH4O15457 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH4O15457 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.51■■□□□ 1.83
MSH4O15457 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH4O15457 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MSH4O15457 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
MSH4O15457 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.5■■□□□ 1.83
MSH4O15457 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.5■■□□□ 1.83
MSH4O15457 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.5■■□□□ 1.83
MSH4O15457 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.5■■□□□ 1.83
MSH4O15457 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH4O15457 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH4O15457 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
MSH4O15457 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH4O15457 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.49■■□□□ 1.83
MSH4O15457 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
MSH4O15457 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.49■■□□□ 1.83
MSH4O15457 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
MSH4O15457 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.48■■□□□ 1.83
MSH4O15457 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
MSH4O15457 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
MSH4O15457 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
MSH4O15457 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.48■■□□□ 1.83
MSH4O15457 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
MSH4O15457 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.48■■□□□ 1.83
MSH4O15457 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.48■■□□□ 1.83
MSH4O15457 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.47■■□□□ 1.83
MSH4O15457 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
MSH4O15457 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
MSH4O15457 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
MSH4O15457 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.47■■□□□ 1.83
MSH4O15457 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.47■■□□□ 1.83
MSH4O15457 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.47■■□□□ 1.83
MSH4O15457 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
MSH4O15457 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
MSH4O15457 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
MSH4O15457 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.47■■□□□ 1.83
MSH4O15457 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.47■■□□□ 1.83
MSH4O15457 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.46■■□□□ 1.83
MSH4O15457 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.46■■□□□ 1.83
MSH4O15457 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
MSH4O15457 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC26.46■■□□□ 1.83
MSH4O15457 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
MSH4O15457 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
MSH4O15457 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.46■■□□□ 1.83
MSH4O15457 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
MSH4O15457 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.83
MSH4O15457 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
MSH4O15457 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.45■■□□□ 1.83
MSH4O15457 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH4O15457 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.45■■□□□ 1.82
MSH4O15457 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
MSH4O15457 AC020928.2-201ENST00000588717 2197 ntBASIC26.45■■□□□ 1.82
MSH4O15457 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
MSH4O15457 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
MSH4O15457 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.44■■□□□ 1.82
MSH4O15457 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.44■■□□□ 1.82
MSH4O15457 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
MSH4O15457 AC137630.3-201ENST00000607245 391 ntBASIC26.44■■□□□ 1.82
MSH4O15457 MIR6089-201ENST00000616698 64 ntBASIC26.44■■□□□ 1.82
MSH4O15457 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
MSH4O15457 AC022211.4-201ENST00000625094 2161 ntBASIC26.44■■□□□ 1.82
MSH4O15457 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
MSH4O15457 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
MSH4O15457 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
MSH4O15457 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
MSH4O15457 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
MSH4O15457 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
MSH4O15457 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.42■■□□□ 1.82
MSH4O15457 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
MSH4O15457 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
MSH4O15457 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH4O15457 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH4O15457 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
MSH4O15457 AC239859.2-201ENST00000444165 318 ntBASIC26.41■■□□□ 1.82
MSH4O15457 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH4O15457 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
MSH4O15457 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH4O15457 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms