Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP1O15259 TFPT-201ENST00000391757 774 ntTSL 5 BASIC29.65■■■□□ 2.34
NPHP1O15259 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP1O15259 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.65■■■□□ 2.34
NPHP1O15259 AL512631.2-201ENST00000604634 923 ntBASIC29.65■■■□□ 2.34
NPHP1O15259 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP1O15259 AF131216.4-201ENST00000638924 1588 ntBASIC29.64■■■□□ 2.34
NPHP1O15259 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
NPHP1O15259 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP1O15259 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP1O15259 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC29.64■■■□□ 2.34
NPHP1O15259 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC29.64■■■□□ 2.34
NPHP1O15259 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.34
NPHP1O15259 FOXO3B-201ENST00000395675 1928 ntBASIC29.63■■■□□ 2.33
NPHP1O15259 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
NPHP1O15259 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
NPHP1O15259 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
NPHP1O15259 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC29.63■■■□□ 2.33
NPHP1O15259 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
NPHP1O15259 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
NPHP1O15259 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
NPHP1O15259 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC29.61■■■□□ 2.33
NPHP1O15259 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
NPHP1O15259 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
NPHP1O15259 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
NPHP1O15259 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC29.61■■■□□ 2.33
NPHP1O15259 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC29.61■■■□□ 2.33
NPHP1O15259 AC133561.4-201ENST00000566112 224 ntBASIC29.61■■■□□ 2.33
NPHP1O15259 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
NPHP1O15259 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
NPHP1O15259 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC29.6■■■□□ 2.33
NPHP1O15259 PBX2P1-201ENST00000493219 1291 ntBASIC29.6■■■□□ 2.33
NPHP1O15259 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC29.6■■■□□ 2.33
NPHP1O15259 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
NPHP1O15259 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC29.59■■■□□ 2.33
NPHP1O15259 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
NPHP1O15259 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
NPHP1O15259 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
NPHP1O15259 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
NPHP1O15259 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC29.58■■■□□ 2.33
NPHP1O15259 RASSF1-AS1-201ENST00000629828 790 ntBASIC29.58■■■□□ 2.33
NPHP1O15259 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC29.58■■■□□ 2.33
NPHP1O15259 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
NPHP1O15259 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
NPHP1O15259 GUK1-205ENST00000366722 850 ntTSL 3 BASIC29.57■■■□□ 2.32
NPHP1O15259 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
NPHP1O15259 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC29.57■■■□□ 2.32
NPHP1O15259 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
NPHP1O15259 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
NPHP1O15259 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
NPHP1O15259 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
NPHP1O15259 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC29.56■■■□□ 2.32
NPHP1O15259 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
NPHP1O15259 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC29.55■■■□□ 2.32
NPHP1O15259 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
NPHP1O15259 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC29.54■■■□□ 2.32
NPHP1O15259 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
NPHP1O15259 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
NPHP1O15259 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
NPHP1O15259 AC142381.2-201ENST00000566120 298 ntBASIC29.54■■■□□ 2.32
NPHP1O15259 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.54■■■□□ 2.32
NPHP1O15259 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC29.53■■■□□ 2.32
NPHP1O15259 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP1O15259 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP1O15259 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
NPHP1O15259 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP1O15259 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP1O15259 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP1O15259 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
NPHP1O15259 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP1O15259 AC106739.1-201ENST00000617035 715 ntBASIC29.52■■■□□ 2.32
NPHP1O15259 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP1O15259 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
NPHP1O15259 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
NPHP1O15259 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
NPHP1O15259 EBPL-204ENST00000378272 766 ntTSL 3 BASIC29.51■■■□□ 2.31
NPHP1O15259 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC29.51■■■□□ 2.31
NPHP1O15259 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
NPHP1O15259 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.5■■■□□ 2.31
NPHP1O15259 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
NPHP1O15259 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.5■■■□□ 2.31
NPHP1O15259 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
NPHP1O15259 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
NPHP1O15259 SNX5-217ENST00000606557 1087 ntBASIC29.49■■■□□ 2.31
NPHP1O15259 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
NPHP1O15259 AC142086.6-201ENST00000621154 1765 ntBASIC29.49■■■□□ 2.31
NPHP1O15259 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
NPHP1O15259 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC29.48■■■□□ 2.31
NPHP1O15259 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC29.48■■■□□ 2.31
NPHP1O15259 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC29.48■■■□□ 2.31
NPHP1O15259 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP1O15259 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
NPHP1O15259 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
NPHP1O15259 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC29.47■■■□□ 2.31
NPHP1O15259 UNC93B3-201ENST00000308076 687 ntBASIC29.47■■■□□ 2.31
NPHP1O15259 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC29.47■■■□□ 2.31
NPHP1O15259 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.47■■■□□ 2.31
NPHP1O15259 AC090877.2-201ENST00000558441 1738 ntBASIC29.47■■■□□ 2.31
NPHP1O15259 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
NPHP1O15259 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC29.46■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms