Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHISA3A0PJX4 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.54■□□□□ 0.88
SHISA3A0PJX4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.53■□□□□ 0.88
SHISA3A0PJX4 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHISA3A0PJX4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SHISA3A0PJX4 HLA-V-202ENST00000446817 847 ntBASIC20.52■□□□□ 0.88
SHISA3A0PJX4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
SHISA3A0PJX4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHISA3A0PJX4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.52■□□□□ 0.88
SHISA3A0PJX4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.52■□□□□ 0.87
SHISA3A0PJX4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHISA3A0PJX4 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.51■□□□□ 0.87
SHISA3A0PJX4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHISA3A0PJX4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L13-201ENST00000554103 1267 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L15-201ENST00000611059 1267 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L23-201ENST00000615195 1269 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L24-201ENST00000617576 1269 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L22-201ENST00000618238 1269 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L20-201ENST00000619712 1269 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L21-201ENST00000622058 1269 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L10-201ENST00000622460 1267 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 DUX4L25-201ENST00000624915 1269 ntBASIC20.5■□□□□ 0.87
SHISA3A0PJX4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.5■□□□□ 0.87
SHISA3A0PJX4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHISA3A0PJX4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHISA3A0PJX4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.49■□□□□ 0.87
SHISA3A0PJX4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHISA3A0PJX4 AL117328.2-201ENST00000624617 1940 ntBASIC20.49■□□□□ 0.87
SHISA3A0PJX4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SHISA3A0PJX4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHISA3A0PJX4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.48■□□□□ 0.87
SHISA3A0PJX4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SHISA3A0PJX4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHISA3A0PJX4 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHISA3A0PJX4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 HLA-L-211ENST00000482052 1765 ntBASIC20.47■□□□□ 0.87
SHISA3A0PJX4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 LINC01971-201ENST00000617888 1048 ntBASIC20.47■□□□□ 0.87
SHISA3A0PJX4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHISA3A0PJX4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.46■□□□□ 0.87
SHISA3A0PJX4 EP400NL-214ENST00000641289 2402 ntBASIC20.46■□□□□ 0.87
SHISA3A0PJX4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
SHISA3A0PJX4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.45■□□□□ 0.87
SHISA3A0PJX4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHISA3A0PJX4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms