Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV41A0A0B4J266 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 AC020928.2-201ENST00000588717 2197 ntBASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 RARRES2P1-201ENST00000474487 481 ntBASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV41A0A0B4J266 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV41A0A0B4J266 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 THA1P-201ENST00000590384 1145 ntBASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 AC011551.1-201ENST00000614101 683 ntBASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV41A0A0B4J266 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 AC022211.4-201ENST00000625094 2161 ntBASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV41A0A0B4J266 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 KRT18P24-201ENST00000344739 1156 ntBASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 AC103724.3-201ENST00000564481 992 ntBASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV41A0A0B4J266 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 AC120024.1-201ENST00000562672 995 ntBASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 AL031848.2-201ENST00000607670 837 ntBASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 AC090877.2-201ENST00000558441 1738 ntBASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV41A0A0B4J266 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.41■□□□□ 0.54
TRAV41A0A0B4J266 MIR6089-201ENST00000616698 64 ntBASIC18.41■□□□□ 0.54
TRAV41A0A0B4J266 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAV41A0A0B4J266 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV41A0A0B4J266 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV41A0A0B4J266 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV41A0A0B4J266 AC142381.3-201ENST00000568208 1670 ntBASIC18.41■□□□□ 0.54
TRAV41A0A0B4J266 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV41A0A0B4J266 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms