Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 AC126177.7-201ENST00000547904 679 ntBASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-2A0A0B4J238 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-2A0A0B4J238 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV1-2A0A0B4J238 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV1-2A0A0B4J238 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV1-2A0A0B4J238 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
TRAV1-2A0A0B4J238 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV1-2A0A0B4J238 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
TRAV1-2A0A0B4J238 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV1-2A0A0B4J238 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.39■□□□□ 0.85
TRAV1-2A0A0B4J238 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV1-2A0A0B4J238 C9orf163-202ENST00000624034 2573 ntBASIC20.39■□□□□ 0.85
TRAV1-2A0A0B4J238 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV1-2A0A0B4J238 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV1-2A0A0B4J238 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV1-2A0A0B4J238 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.38■□□□□ 0.85
TRAV1-2A0A0B4J238 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TRAV1-2A0A0B4J238 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV1-2A0A0B4J238 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAV1-2A0A0B4J238 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 HLA-L-211ENST00000482052 1765 ntBASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-2A0A0B4J238 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 CLDN5-201ENST00000403084 2357 ntBASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-2A0A0B4J238 AL117328.2-201ENST00000624617 1940 ntBASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 DUX4L11-201ENST00000611504 1267 ntBASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 DUX4L12-201ENST00000614593 1267 ntBASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 DUX4L14-201ENST00000621227 1267 ntBASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
TRAV1-2A0A0B4J238 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAV1-2A0A0B4J238 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV1-2A0A0B4J238 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV1-2A0A0B4J238 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV1-2A0A0B4J238 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
TRAV1-2A0A0B4J238 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV1-2A0A0B4J238 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV1-2A0A0B4J238 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.33■□□□□ 0.84
TRAV1-2A0A0B4J238 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV1-2A0A0B4J238 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-2A0A0B4J238 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms